Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8489 | 3' | -41.6 | NC_002169.1 | + | 41999 | 0.76 | 0.992638 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCAUCu -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10935 | 0.79 | 0.965415 |
Target: 5'- cUUUGGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 10707 | 0.79 | 0.968948 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11034 | 0.79 | 0.968948 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105322 | 0.78 | 0.977996 |
Target: 5'- --aAGUACAcaAUGUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUacUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11442 | 0.78 | 0.982836 |
Target: 5'- -aUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 71637 | 0.78 | 0.984931 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52898 | 0.77 | 0.991426 |
Target: 5'- uUUUAGUACAUcAUcUUUGCUUUCAUCc -3' miRNA: 3'- -AGAUCAUGUAcUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119602 | 0.77 | 0.991426 |
Target: 5'- --cAGUACAcGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 120037 | 0.8 | 0.948477 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 119418 | 0.8 | 0.948477 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCGUCc -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 11568 | 0.82 | 0.900201 |
Target: 5'- cUCUAGUACucGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGuaCUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53040 | 1 | 0.200327 |
Target: 5'- uUCUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 52662 | 0.98 | 0.25688 |
Target: 5'- uUUUAGUACAcGAUGUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUaCUACAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42255 | 0.94 | 0.397957 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 104833 | 0.94 | 0.397957 |
Target: 5'- uUUUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 42188 | 0.91 | 0.512162 |
Target: 5'- -gUAGUACAUGAUcUUUGCUUUCAUCg -3' miRNA: 3'- agAUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 53123 | 0.87 | 0.706753 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3' miRNA: 3'- agaUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 104956 | 0.85 | 0.803919 |
Target: 5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3' miRNA: 3'- agaUCAUGUACUAcAAACGAAAGUAG- -5' |
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8489 | 3' | -41.6 | NC_002169.1 | + | 105091 | 0.83 | 0.860333 |
Target: 5'- uUUUAGUACAcGAUcUUUGCUUUCAUCg -3' miRNA: 3'- -AGAUCAUGUaCUAcAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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