miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8489 5' -46.6 NC_002169.1 + 48715 0.66 0.999768
Target:  5'- uUGGGCGAuGGUu-AGAaUUGUGUACg- -3'
miRNA:   3'- -ACCUGCUuUCGuuUCU-AGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 10971 0.66 0.99962
Target:  5'- -cGACGAAA-CAAAGAUCaUGUAUUAa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 64769 0.67 0.99952
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGUuuGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGCA--CAuGAU- -5'
8489 5' -46.6 NC_002169.1 + 58439 0.67 0.999248
Target:  5'- uUGGGCGGAGcauacgugcGCAAucuuAUCGUGUACg- -3'
miRNA:   3'- -ACCUGCUUU---------CGUUuc--UAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 29549 0.67 0.999068
Target:  5'- gUGGACGAGAaCGAGGAcgaGUGUaaaACUAa -3'
miRNA:   3'- -ACCUGCUUUcGUUUCUag-CACA---UGAU- -5'
8489 5' -46.6 NC_002169.1 + 37286 0.68 0.998853
Target:  5'- cGGAuCGAcgGAGCAGGGAUCGaUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAGC-ACaUGau -5'
8489 5' -46.6 NC_002169.1 + 84422 0.69 0.996468
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUAc -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGC--ACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11476 0.69 0.994233
Target:  5'- -cGAUGAAAGCAAAcAUCaUGUACUAg -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52934 0.71 0.984565
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCaCAUGau -5'
8489 5' -46.6 NC_002169.1 + 129820 0.71 0.980279
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGCACAUGau -5'
8489 5' -46.6 NC_002169.1 + 10677 0.75 0.917355
Target:  5'- -cGAUGAAAGCAAAGAUCGUuGUGg-- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCA-CAUgau -5'
8489 5' -46.6 NC_002169.1 + 10551 0.77 0.832549
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 104989 0.78 0.794696
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGau -5'
8489 5' -46.6 NC_002169.1 + 105128 0.8 0.700511
Target:  5'- --uACGAAAGCAAAGAUCaUGUACUAg -3'
miRNA:   3'- accUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 104797 0.8 0.689548
Target:  5'- uUGGACGAAAGCAAAGAUUG---ACUAu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGCacaUGAU- -5'
8489 5' -46.6 NC_002169.1 + 11330 0.8 0.678528
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGCACau---GAU- -5'
8489 5' -46.6 NC_002169.1 + 104925 0.81 0.63411
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 52823 0.82 0.600739
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUAa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGCACAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 41902 0.82 0.600739
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUAa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGCaCAUGAU- -5'
8489 5' -46.6 NC_002169.1 + 42348 0.82 0.578612
Target:  5'- -cGAUGAAAGCAAAGAUCaUGUACUAc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGcACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.