Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8490 | 3' | -41.4 | NC_002169.1 | + | 120235 | 1.12 | 0.050261 |
Target: 5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11766 | 1.1 | 0.064233 |
Target: 5'- aUAUAAUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11478 | 1.1 | 0.058601 |
Target: 5'- aAUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 42194 | 1.09 | 0.066224 |
Target: 5'- uUAUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11441 | 1.08 | 0.077103 |
Target: 5'- aAUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aUAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 105398 | 1.07 | 0.087019 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 119420 | 1.05 | 0.113935 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 119602 | 1.05 | 0.120895 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11171 | 1.05 | 0.120895 |
Target: 5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 120039 | 1.05 | 0.113935 |
Target: 5'- -uUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 10937 | 1.04 | 0.128248 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 119794 | 1.04 | 0.128248 |
Target: 5'- -uUGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11130 | 1.03 | 0.148474 |
Target: 5'- -uUAAUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 10902 | 1.03 | 0.148474 |
Target: 5'- -uUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11230 | 1.03 | 0.152853 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 52784 | 1.02 | 0.161965 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 105501 | 1.02 | 0.15735 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 11364 | 1.01 | 0.192292 |
Target: 5'- -uUAAUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 53123 | 1 | 0.203459 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- auaUUAUGUGCUAGAAACGAAAGCAG- -5' |
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8490 | 3' | -41.4 | NC_002169.1 | + | 52857 | 1 | 0.197807 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- auAUUAUGUGCUAGAAACGAAAGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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