miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8490 3' -41.4 NC_002169.1 + 41053 0.67 1
Target:  5'- cGUAAUcgaAUACGGUCUUUGg---CGUCg -3'
miRNA:   3'- aUAUUA---UGUGCUAGAAACgaaaGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119516 0.89 0.610167
Target:  5'- -uUAGUACACGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105287 0.95 0.348044
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGCAg -5'
8490 3' -41.4 NC_002169.1 + 120235 1.12 0.050261
Target:  5'- uUGUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AUAUUAUGUGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 27556 0.7 0.999996
Target:  5'- gAUGAgauuUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- aUAUU----AUGUGCUAGaaaCGaa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 29673 0.7 0.999992
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- auauuaUGUGCUAGa-AACG-AAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 104957 0.73 0.999757
Target:  5'- cAUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aUAUUAuGUgcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105145 0.78 0.979782
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auauuaUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42378 0.8 0.956174
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 119614 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 105026 0.85 0.790141
Target:  5'- ----cUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auauuAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 52976 0.79 0.971235
Target:  5'- -uUAGUACACcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGcUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 22486 0.67 1
Target:  5'- -cUAcgGCGCGGUCg--GCgcaguauggUUCGUCg -3'
miRNA:   3'- auAUuaUGUGCUAGaaaCGa--------AAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 105601 0.87 0.736389
Target:  5'- ---cAUACACaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- auauUAUGUGcUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 127259 0.68 1
Target:  5'- aUAUGcacCACGAUCgcuucgUGCUcgUCGUCa -3'
miRNA:   3'- -AUAUuauGUGCUAGaa----ACGAa-AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11636 0.79 0.97433
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAgAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 11010 0.89 0.621772
Target:  5'- -uUAGUACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- auAUUAUGUGCUAGAAACGAAAGcAG- -5'
8490 3' -41.4 NC_002169.1 + 42063 0.94 0.41351
Target:  5'- -uUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- auAUUAUGuGCUAGAAACGAAAGCAG- -5'
8490 3' -41.4 NC_002169.1 + 10711 0.69 0.999998
Target:  5'- -uUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- auAUUAUGUGcUAgAAACGAA----------AGCAG- -5'
8490 3' -41.4 NC_002169.1 + 11559 0.71 0.999942
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- auauuaUGUGcUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.