miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 1486 0.71 0.855526
Target:  5'- ---------gCCGCCGCCGCCGCCGUc -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 1518 0.75 0.604584
Target:  5'- -gCAuuuAUACcaCCACCACCACCACCGc -3'
miRNA:   3'- caGUuu-UAUG--GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1630 0.75 0.615377
Target:  5'- cGUUGAAAccGCacugCCACCACCACCACCAc -3'
miRNA:   3'- -CAGUUUUa-UG----GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1702 0.73 0.753446
Target:  5'- ---------gCCGCCACCGCCACCAa -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1726 0.75 0.626185
Target:  5'- -aCAAucuUACgCGCCGCCGCCACCGc -3'
miRNA:   3'- caGUUuu-AUGgGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 2934 0.66 0.975118
Target:  5'- cGUCGAGAcacgacucuugACCCACCACCuuGCacagACCAUa -3'
miRNA:   3'- -CAGUUUUa----------UGGGUGGUGG--UGg---UGGUA- -5'
8494 3' -51.4 NC_002169.1 + 4269 0.66 0.975118
Target:  5'- -gCAAAauGUugUCGCCGUCGCCGCCGUc -3'
miRNA:   3'- caGUUU--UAugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 4290 0.74 0.658602
Target:  5'- -cCAGuuucaCCGCCGCCACCACCAc -3'
miRNA:   3'- caGUUuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 6214 0.74 0.701444
Target:  5'- aUCGAcgcuGUAgUCGCCGCCGCCGCCGc -3'
miRNA:   3'- cAGUUu---UAUgGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 8894 0.71 0.820943
Target:  5'- uUCAGccGAUGCCCGugcCCACCGCCGucCCAg -3'
miRNA:   3'- cAGUU--UUAUGGGU---GGUGGUGGU--GGUa -5'
8494 3' -51.4 NC_002169.1 + 12665 0.66 0.982298
Target:  5'- cGUCA----ACgCCGCCACCAgCCACaCAa -3'
miRNA:   3'- -CAGUuuuaUG-GGUGGUGGU-GGUG-GUa -5'
8494 3' -51.4 NC_002169.1 + 15156 0.77 0.519723
Target:  5'- -aUAAAuguUugCCGCCGCCACCGCCGc -3'
miRNA:   3'- caGUUUu--AugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 18218 0.74 0.701444
Target:  5'- cGUCAAAGUccacgucgauaACCCAUUcacgGCCGCCGCCGUc -3'
miRNA:   3'- -CAGUUUUA-----------UGGGUGG----UGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 19400 0.66 0.982298
Target:  5'- gGUguGAAUuaACCCGCCAUCGCaucCCAUa -3'
miRNA:   3'- -CAguUUUA--UGGGUGGUGGUGgu-GGUA- -5'
8494 3' -51.4 NC_002169.1 + 30317 0.68 0.950545
Target:  5'- uGUCGAcg-ACgCCGCCgcucacguuGCCGCCGCCGa -3'
miRNA:   3'- -CAGUUuuaUG-GGUGG---------UGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 30513 1.06 0.009418
Target:  5'- cGUCAAAAUACCCACCACCACCACCAUc -3'
miRNA:   3'- -CAGUUUUAUGGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 35162 0.67 0.958777
Target:  5'- aUCGAgcgcgcAAUACaacuaaguGCCACCGCCGCCAUg -3'
miRNA:   3'- cAGUU------UUAUGgg------UGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 44523 0.66 0.977714
Target:  5'- aUCGAGAaaauuuugGCCUuuuUCGCCGCCGCCGa -3'
miRNA:   3'- cAGUUUUa-------UGGGu--GGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 45933 0.71 0.838654
Target:  5'- cGUCGu----CCggCACCGCCGCCGCCAg -3'
miRNA:   3'- -CAGUuuuauGG--GUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 46059 0.69 0.925409
Target:  5'- cGUCucGAUGCUguccucgccguCACCACCAUCAUCAUc -3'
miRNA:   3'- -CAGuuUUAUGG-----------GUGGUGGUGGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.