miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 15156 0.77 0.519723
Target:  5'- -aUAAAuguUugCCGCCGCCACCGCCGc -3'
miRNA:   3'- caGUUUu--AugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 19400 0.66 0.982298
Target:  5'- gGUguGAAUuaACCCGCCAUCGCaucCCAUa -3'
miRNA:   3'- -CAguUUUA--UGGGUGGUGGUGgu-GGUA- -5'
8494 3' -51.4 NC_002169.1 + 118768 0.66 0.981444
Target:  5'- -cCAAAAU-CCCGacgacaacgacgaCGCCGCCGCCGUu -3'
miRNA:   3'- caGUUUUAuGGGUg------------GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 44523 0.66 0.977714
Target:  5'- aUCGAGAaaauuuugGCCUuuuUCGCCGCCGCCGa -3'
miRNA:   3'- cAGUUUUa-------UGGGu--GGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 4269 0.66 0.975118
Target:  5'- -gCAAAauGUugUCGCCGUCGCCGCCGUc -3'
miRNA:   3'- caGUUU--UAugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 82505 0.66 0.972308
Target:  5'- -cCGuAGUACCaaaaACaaCACCGCCACCAUa -3'
miRNA:   3'- caGUuUUAUGGg---UG--GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 117645 0.67 0.969276
Target:  5'- -cCAA---GCCCguaaagaagacaACCGCCGCCGCCGc -3'
miRNA:   3'- caGUUuuaUGGG------------UGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 35162 0.67 0.958777
Target:  5'- aUCGAgcgcgcAAUACaacuaaguGCCACCGCCGCCAUg -3'
miRNA:   3'- cAGUU------UUAUGgg------UGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 30317 0.68 0.950545
Target:  5'- uGUCGAcg-ACgCCGCCgcucacguuGCCGCCGCCGa -3'
miRNA:   3'- -CAGUUuuaUG-GGUGG---------UGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 92781 0.68 0.946045
Target:  5'- -gCAAAcguCCCAUCACCAUUGCCAa -3'
miRNA:   3'- caGUUUuauGGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 18218 0.74 0.701444
Target:  5'- cGUCAAAGUccacgucgauaACCCAUUcacgGCCGCCGCCGUc -3'
miRNA:   3'- -CAGUUUUA-----------UGGGUGG----UGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 6214 0.74 0.701444
Target:  5'- aUCGAcgcuGUAgUCGCCGCCGCCGCCGc -3'
miRNA:   3'- cAGUUu---UAUgGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 8894 0.71 0.820943
Target:  5'- uUCAGccGAUGCCCGugcCCACCGCCGucCCAg -3'
miRNA:   3'- cAGUU--UUAUGGGU---GGUGGUGGU--GGUa -5'
8494 3' -51.4 NC_002169.1 + 45933 0.71 0.838654
Target:  5'- cGUCGu----CCggCACCGCCGCCGCCAg -3'
miRNA:   3'- -CAGUuuuauGG--GUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 121917 0.7 0.871497
Target:  5'- aUCAuc--ACCaaCACCACCACCACCu- -3'
miRNA:   3'- cAGUuuuaUGG--GUGGUGGUGGUGGua -5'
8494 3' -51.4 NC_002169.1 + 118358 0.69 0.913494
Target:  5'- uGUUuGAGUAaucaugaUCAUCACCACCACCAUc -3'
miRNA:   3'- -CAGuUUUAUg------GGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 67414 0.69 0.919585
Target:  5'- -cCGAAAacUCCACCGCCAUCACgAUg -3'
miRNA:   3'- caGUUUUauGGGUGGUGGUGGUGgUA- -5'
8494 3' -51.4 NC_002169.1 + 30513 1.06 0.009418
Target:  5'- cGUCAAAAUACCCACCACCACCACCAUc -3'
miRNA:   3'- -CAGUUUUAUGGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 73052 0.66 0.980104
Target:  5'- cGUCGAGGacCCCGCCACggacaaAUCGCCGa -3'
miRNA:   3'- -CAGUUUUauGGGUGGUGg-----UGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 124543 0.66 0.977714
Target:  5'- -aCGAcAUACUCACCAUCGaCGCCAUu -3'
miRNA:   3'- caGUUuUAUGGGUGGUGGUgGUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.