miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 78136 0.66 0.975118
Target:  5'- uUCGA---GCCCGCCGa-GCCGCCGUc -3'
miRNA:   3'- cAGUUuuaUGGGUGGUggUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 1630 0.75 0.615377
Target:  5'- cGUUGAAAccGCacugCCACCACCACCACCAc -3'
miRNA:   3'- -CAGUUUUa-UG----GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 108885 0.76 0.561719
Target:  5'- cGUCGucGU-CgCCGCCGCCGCCGCCAc -3'
miRNA:   3'- -CAGUuuUAuG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 30513 1.06 0.009418
Target:  5'- cGUCAAAAUACCCACCACCACCACCAUc -3'
miRNA:   3'- -CAGUUUUAUGGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 46059 0.69 0.925409
Target:  5'- cGUCucGAUGCUguccucgccguCACCACCAUCAUCAUc -3'
miRNA:   3'- -CAGuuUUAUGG-----------GUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 109259 0.69 0.913494
Target:  5'- -aCAGAGgaaaaacuuuuUGCCCGCCACCGucauuUCGCCGUg -3'
miRNA:   3'- caGUUUU-----------AUGGGUGGUGGU-----GGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 12665 0.66 0.982298
Target:  5'- cGUCA----ACgCCGCCACCAgCCACaCAa -3'
miRNA:   3'- -CAGUuuuaUG-GGUGGUGGU-GGUG-GUa -5'
8494 3' -51.4 NC_002169.1 + 73052 0.66 0.980104
Target:  5'- cGUCGAGGacCCCGCCACggacaaAUCGCCGa -3'
miRNA:   3'- -CAGUUUUauGGGUGGUGg-----UGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 124543 0.66 0.977714
Target:  5'- -aCGAcAUACUCACCAUCGaCGCCAUu -3'
miRNA:   3'- caGUUuUAUGGGUGGUGGUgGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 1726 0.75 0.626185
Target:  5'- -aCAAucuUACgCGCCGCCGCCACCGc -3'
miRNA:   3'- caGUUuu-AUGgGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 102900 0.72 0.763531
Target:  5'- cGUCGuuGUccucguCgCCGCCGCCGCCGCCGg -3'
miRNA:   3'- -CAGUuuUAu-----G-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1486 0.71 0.855526
Target:  5'- ---------gCCGCCGCCGCCGCCGUc -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 110561 0.67 0.958777
Target:  5'- gGUCcGAAUGgUCGCCGCCGCgaACCAc -3'
miRNA:   3'- -CAGuUUUAUgGGUGGUGGUGg-UGGUa -5'
8494 3' -51.4 NC_002169.1 + 1702 0.73 0.753446
Target:  5'- ---------gCCGCCACCGCCACCAa -3'
miRNA:   3'- caguuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 110147 0.68 0.946045
Target:  5'- cGUgGAGcacAUGCCCGcCCugCACCugCAc -3'
miRNA:   3'- -CAgUUU---UAUGGGU-GGugGUGGugGUa -5'
8494 3' -51.4 NC_002169.1 + 125090 0.7 0.871497
Target:  5'- uGUCGccg---CCGCCGCCGCCGCCGc -3'
miRNA:   3'- -CAGUuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 4290 0.74 0.658602
Target:  5'- -cCAGuuucaCCGCCGCCACCACCAc -3'
miRNA:   3'- caGUUuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 1518 0.75 0.604584
Target:  5'- -gCAuuuAUACcaCCACCACCACCACCGc -3'
miRNA:   3'- caGUuu-UAUG--GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 121269 0.69 0.925409
Target:  5'- -cCAAcAUGCCCACCagauacACgACCGCCGg -3'
miRNA:   3'- caGUUuUAUGGGUGG------UGgUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 60200 0.7 0.893643
Target:  5'- gGUCG--GUGCCCAUCGCCAaguaCACUGUg -3'
miRNA:   3'- -CAGUuuUAUGGGUGGUGGUg---GUGGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.