miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8494 3' -51.4 NC_002169.1 + 128119 0.8 0.359149
Target:  5'- aUCAAAAUuacgACgCCGCCGCCGCCGCCGc -3'
miRNA:   3'- cAGUUUUA----UG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 125090 0.7 0.871497
Target:  5'- uGUCGccg---CCGCCGCCGCCGCCGc -3'
miRNA:   3'- -CAGUuuuaugGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 124543 0.66 0.977714
Target:  5'- -aCGAcAUACUCACCAUCGaCGCCAUu -3'
miRNA:   3'- caGUUuUAUGGGUGGUGGUgGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 122646 0.82 0.303863
Target:  5'- --aGAAAUAUaCCACCACCACCACCAc -3'
miRNA:   3'- cagUUUUAUG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 121917 0.7 0.871497
Target:  5'- aUCAuc--ACCaaCACCACCACCACCu- -3'
miRNA:   3'- cAGUuuuaUGG--GUGGUGGUGGUGGua -5'
8494 3' -51.4 NC_002169.1 + 121269 0.69 0.925409
Target:  5'- -cCAAcAUGCCCACCagauacACgACCGCCGg -3'
miRNA:   3'- caGUUuUAUGGGUGG------UGgUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 118768 0.66 0.981444
Target:  5'- -cCAAAAU-CCCGacgacaacgacgaCGCCGCCGCCGUu -3'
miRNA:   3'- caGUUUUAuGGGUg------------GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 118358 0.69 0.913494
Target:  5'- uGUUuGAGUAaucaugaUCAUCACCACCACCAUc -3'
miRNA:   3'- -CAGuUUUAUg------GGUGGUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 117645 0.67 0.969276
Target:  5'- -cCAA---GCCCguaaagaagacaACCGCCGCCGCCGc -3'
miRNA:   3'- caGUUuuaUGGG------------UGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 110561 0.67 0.958777
Target:  5'- gGUCcGAAUGgUCGCCGCCGCgaACCAc -3'
miRNA:   3'- -CAGuUUUAUgGGUGGUGGUGg-UGGUa -5'
8494 3' -51.4 NC_002169.1 + 110147 0.68 0.946045
Target:  5'- cGUgGAGcacAUGCCCGcCCugCACCugCAc -3'
miRNA:   3'- -CAgUUU---UAUGGGU-GGugGUGGugGUa -5'
8494 3' -51.4 NC_002169.1 + 109259 0.69 0.913494
Target:  5'- -aCAGAGgaaaaacuuuuUGCCCGCCACCGucauuUCGCCGUg -3'
miRNA:   3'- caGUUUU-----------AUGGGUGGUGGU-----GGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 108885 0.76 0.561719
Target:  5'- cGUCGucGU-CgCCGCCGCCGCCGCCAc -3'
miRNA:   3'- -CAGUuuUAuG-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 108038 0.87 0.147042
Target:  5'- cGUCGucucGCCCACCACCACCACCGc -3'
miRNA:   3'- -CAGUuuuaUGGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 102900 0.72 0.763531
Target:  5'- cGUCGuuGUccucguCgCCGCCGCCGCCGCCGg -3'
miRNA:   3'- -CAGUuuUAu-----G-GGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 92781 0.68 0.946045
Target:  5'- -gCAAAcguCCCAUCACCAUUGCCAa -3'
miRNA:   3'- caGUUUuauGGGUGGUGGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 85658 0.78 0.489053
Target:  5'- uUgAAGAUGCCCACCG-CACCGCCGa -3'
miRNA:   3'- cAgUUUUAUGGGUGGUgGUGGUGGUa -5'
8494 3' -51.4 NC_002169.1 + 82505 0.66 0.972308
Target:  5'- -cCGuAGUACCaaaaACaaCACCGCCACCAUa -3'
miRNA:   3'- caGUuUUAUGGg---UG--GUGGUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 78136 0.66 0.975118
Target:  5'- uUCGA---GCCCGCCGa-GCCGCCGUc -3'
miRNA:   3'- cAGUUuuaUGGGUGGUggUGGUGGUA- -5'
8494 3' -51.4 NC_002169.1 + 73052 0.66 0.980104
Target:  5'- cGUCGAGGacCCCGCCACggacaaAUCGCCGa -3'
miRNA:   3'- -CAGUUUUauGGGUGGUGg-----UGGUGGUa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.