miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8509 5' -42.8 NC_002169.1 + 93334 1.06 0.065783
Target:  5'- cACCACCAUCAUCAUCAUUAUCAUUAUc -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 46036 0.9 0.447903
Target:  5'- cACCACCAUCAUCAUCAUcAUCAUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 65448 0.86 0.648455
Target:  5'- cGCCGCCGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 4287 0.86 0.648455
Target:  5'- cGCCGCCGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 135366 0.83 0.792466
Target:  5'- cGCCGCCGUCGUCGcCGUUGUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUaGUAAUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 3218 0.81 0.859007
Target:  5'- gUCGUCGUCGUCGUCAUUGUCAUUGUc -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 3345 0.81 0.867549
Target:  5'- -aCAUCGUCGUCAUCAUUGUCGUc-- -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 49309 0.81 0.87582
Target:  5'- cGCCAUCGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 3784 0.8 0.912897
Target:  5'- cAUCGCCGUCGUUAUUAUUAUUGUUAUu -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 56050 0.79 0.925642
Target:  5'- uAUCAUCAUCAUCAUCAUcAUCAUa-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 120971 0.78 0.956617
Target:  5'- gUCGCCGUCGUCGUUGUUGUUGUUGc -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAAUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 127467 0.78 0.960749
Target:  5'- uAUCAUCGUCAUUcuuGUCGUUGUCAUUAa -3'
miRNA:   3'- -UGGUGGUAGUAG---UAGUAAUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 53028 0.77 0.974552
Target:  5'- aACUAUCGUCAcaaucguaauuaUCGUCGUUGUCGUUGUc -3'
miRNA:   3'- -UGGUGGUAGU------------AGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 15177 0.77 0.974552
Target:  5'- cGCCGCCGUCGUUGUCGUagaucgccgaacUAUUAUUGUu -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUA------------AUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 52612 0.76 0.977364
Target:  5'- aGCgAUgaUAUCAUCAUCAUUAUCAUUGc -3'
miRNA:   3'- -UGgUG--GUAGUAGUAGUAAUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 29692 0.76 0.979941
Target:  5'- gGCUAuaaucUCAUCAUCAUCAUUAUCAUc-- -3'
miRNA:   3'- -UGGU-----GGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 130113 0.76 0.979941
Target:  5'- uAUCAUCAUCAUCAUCAUUAUaaCAUg-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAAUA--GUAaua -5'
8509 5' -42.8 NC_002169.1 + 75276 0.75 0.986367
Target:  5'- aAUCAUCGUCAUCGUCAUUAUUuugGUa -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAAUAGuaaUA- -5'
8509 5' -42.8 NC_002169.1 + 12463 0.75 0.98968
Target:  5'- -aCAUCAUUAUCAUUAUUAUCAUa-- -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 4390 0.75 0.991081
Target:  5'- gUCAUCAUCugcgacuUCAUCGUUGUCGUUGUc -3'
miRNA:   3'- uGGUGGUAGu------AGUAGUAAUAGUAAUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.