Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8509 | 5' | -42.8 | NC_002169.1 | + | 71739 | 0.69 | 0.99994 |
Target: 5'- gUCACUGUCGUCGUCGUcaaUGUCuUUGUa -3' miRNA: 3'- uGGUGGUAGUAGUAGUA---AUAGuAAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 74748 | 0.73 | 0.997683 |
Target: 5'- uCCGCCGUCGUCGccaUCGUUGUUggUGUc -3' miRNA: 3'- uGGUGGUAGUAGU---AGUAAUAGuaAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 32578 | 0.73 | 0.997683 |
Target: 5'- cACCGCUGUCGUCGUCGUcgccGUCAa--- -3' miRNA: 3'- -UGGUGGUAGUAGUAGUAa---UAGUaaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 47478 | 0.71 | 0.999341 |
Target: 5'- uUCAUCGUCAUCGUCGUcuUUAUUAa -3' miRNA: 3'- uGGUGGUAGUAGUAGUAauAGUAAUa -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 76459 | 0.71 | 0.999341 |
Target: 5'- aAUCAaaaCGUCGUCGUCGUUGUUAUUu- -3' miRNA: 3'- -UGGUg--GUAGUAGUAGUAAUAGUAAua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 116995 | 0.71 | 0.999753 |
Target: 5'- cACCuuuGCCAUCGUCAUUAUgGUCGa--- -3' miRNA: 3'- -UGG---UGGUAGUAGUAGUAaUAGUaaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 43015 | 0.7 | 0.99981 |
Target: 5'- gGCCACCGUCAgCGUCAaUAgacUCAUg-- -3' miRNA: 3'- -UGGUGGUAGUaGUAGUaAU---AGUAaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 86752 | 0.7 | 0.999856 |
Target: 5'- gUCGUCGUCGUCGUCGUcGUCGUUGa -3' miRNA: 3'- uGGUGGUAGUAGUAGUAaUAGUAAUa -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 4535 | 0.7 | 0.999891 |
Target: 5'- -gCGUCGUCGUCGUCGUcGUCAUUAa -3' miRNA: 3'- ugGUGGUAGUAGUAGUAaUAGUAAUa -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 39387 | 0.73 | 0.996648 |
Target: 5'- cACCGCCGUCGUCAUCGccgcCAUg-- -3' miRNA: 3'- -UGGUGGUAGUAGUAGUaauaGUAaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 4390 | 0.75 | 0.991081 |
Target: 5'- gUCAUCAUCugcgacuUCAUCGUUGUCGUUGUc -3' miRNA: 3'- uGGUGGUAGu------AGUAGUAAUAGUAAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 130113 | 0.76 | 0.979941 |
Target: 5'- uAUCAUCAUCAUCAUCAUUAUaaCAUg-- -3' miRNA: 3'- -UGGUGGUAGUAGUAGUAAUA--GUAaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 3218 | 0.81 | 0.859007 |
Target: 5'- gUCGUCGUCGUCGUCAUUGUCAUUGUc -3' miRNA: 3'- uGGUGGUAGUAGUAGUAAUAGUAAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 3345 | 0.81 | 0.867549 |
Target: 5'- -aCAUCGUCGUCAUCAUUGUCGUc-- -3' miRNA: 3'- ugGUGGUAGUAGUAGUAAUAGUAaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 3784 | 0.8 | 0.912897 |
Target: 5'- cAUCGCCGUCGUUAUUAUUAUUGUUAUu -3' miRNA: 3'- -UGGUGGUAGUAGUAGUAAUAGUAAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 56050 | 0.79 | 0.925642 |
Target: 5'- uAUCAUCAUCAUCAUCAUcAUCAUa-- -3' miRNA: 3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 127467 | 0.78 | 0.960749 |
Target: 5'- uAUCAUCGUCAUUcuuGUCGUUGUCAUUAa -3' miRNA: 3'- -UGGUGGUAGUAG---UAGUAAUAGUAAUa -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 15177 | 0.77 | 0.974552 |
Target: 5'- cGCCGCCGUCGUUGUCGUagaucgccgaacUAUUAUUGUu -3' miRNA: 3'- -UGGUGGUAGUAGUAGUA------------AUAGUAAUA- -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 52612 | 0.76 | 0.977364 |
Target: 5'- aGCgAUgaUAUCAUCAUCAUUAUCAUUGc -3' miRNA: 3'- -UGgUG--GUAGUAGUAGUAAUAGUAAUa -5' |
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8509 | 5' | -42.8 | NC_002169.1 | + | 29692 | 0.76 | 0.979941 |
Target: 5'- gGCUAuaaucUCAUCAUCAUCAUUAUCAUc-- -3' miRNA: 3'- -UGGU-----GGUAGUAGUAGUAAUAGUAaua -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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