miRNA display CGI


Results 1 - 20 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8509 5' -42.8 NC_002169.1 + 1454 0.71 0.999681
Target:  5'- cACCGCCGUCGcugccacuuUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGU---------AGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 1478 0.73 0.998091
Target:  5'- cGCCGCCGUCAUCGUC----UCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGuaauAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 3218 0.81 0.859007
Target:  5'- gUCGUCGUCGUCGUCAUUGUCAUUGUc -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 3345 0.81 0.867549
Target:  5'- -aCAUCGUCGUCAUCAUUGUCGUc-- -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 3784 0.8 0.912897
Target:  5'- cAUCGCCGUCGUUAUUAUUAUUGUUAUu -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 4268 0.72 0.999174
Target:  5'- cACCACCGUCGauaUCGUCAUUAa------ -3'
miRNA:   3'- -UGGUGGUAGU---AGUAGUAAUaguaaua -5'
8509 5' -42.8 NC_002169.1 + 4287 0.86 0.648455
Target:  5'- cGCCGCCGUCGUCGUCGUcGUCGUc-- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 4390 0.75 0.991081
Target:  5'- gUCAUCAUCugcgacuUCAUCGUUGUCGUUGUc -3'
miRNA:   3'- uGGUGGUAGu------AGUAGUAAUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 4535 0.7 0.999891
Target:  5'- -gCGUCGUCGUCGUCGUcGUCAUUAa -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 12463 0.75 0.98968
Target:  5'- -aCAUCAUUAUCAUUAUUAUCAUa-- -3'
miRNA:   3'- ugGUGGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 15177 0.77 0.974552
Target:  5'- cGCCGCCGUCGUUGUCGUagaucgccgaacUAUUAUUGUu -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUA------------AUAGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 18891 0.67 0.999999
Target:  5'- cACCAacaauaacaaaCAUCAUCAUCAUcAUCAa--- -3'
miRNA:   3'- -UGGUg----------GUAGUAGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 19083 0.67 0.999998
Target:  5'- cACUGCCGUgAUCGUUGUUGgggCGUUGa -3'
miRNA:   3'- -UGGUGGUAgUAGUAGUAAUa--GUAAUa -5'
8509 5' -42.8 NC_002169.1 + 24874 0.71 0.999681
Target:  5'- gUCGUCGUCGUCGUCGUcGUCGUUAa -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAAUa -5'
8509 5' -42.8 NC_002169.1 + 25517 0.69 0.999977
Target:  5'- gUCGUCGUCGUCGUCGUUAcCGUUGUu -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAAUaGUAAUA- -5'
8509 5' -42.8 NC_002169.1 + 29692 0.76 0.979941
Target:  5'- gGCUAuaaucUCAUCAUCAUCAUUAUCAUc-- -3'
miRNA:   3'- -UGGU-----GGUAGUAGUAGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 30428 0.73 0.996648
Target:  5'- cACCGUCGUCGUCAUCAUaAUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAaUAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 31363 0.71 0.999681
Target:  5'- aACCACgGUCGUCA-CAUUGUUGUa-- -3'
miRNA:   3'- -UGGUGgUAGUAGUaGUAAUAGUAaua -5'
8509 5' -42.8 NC_002169.1 + 32578 0.73 0.997683
Target:  5'- cACCGCUGUCGUCGUCGUcgccGUCAa--- -3'
miRNA:   3'- -UGGUGGUAGUAGUAGUAa---UAGUaaua -5'
8509 5' -42.8 NC_002169.1 + 33271 0.67 0.999999
Target:  5'- gUCGUCGUCGUCGUCGUcGUCAUUu- -3'
miRNA:   3'- uGGUGGUAGUAGUAGUAaUAGUAAua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.