miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 11443 0.8 0.778893
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11330 0.81 0.747723
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACau---GAC- -5'
8512 5' -45.3 NC_002169.1 + 11730 0.81 0.726314
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10976 0.82 0.704516
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105443 0.83 0.648939
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 52817 0.84 0.592949
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105483 0.84 0.581816
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10870 0.85 0.54871
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42029 0.85 0.5378
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 119484 0.86 0.505552
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUAcAUGac -5'
8512 5' -45.3 NC_002169.1 + 105534 0.86 0.474163
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105366 0.87 0.433899
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42289 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACA---UGAc -5'
8512 5' -45.3 NC_002169.1 + 42220 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGU-UUGg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuGAC- -5'
8512 5' -45.3 NC_002169.1 + 41930 0.89 0.368499
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGac -5'
8512 5' -45.3 NC_002169.1 + 105128 0.89 0.351096
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 104989 0.9 0.334284
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 120073 0.9 0.310187
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105253 0.91 0.273009
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 104867 0.92 0.266016
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.