Results 21 - 40 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8512 | 5' | -45.3 | NC_002169.1 | + | 105571 | 0.96 | 0.150456 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGUGUAUUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 104925 | 0.96 | 0.154732 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUAUUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 42158 | 0.96 | 0.154732 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105238 | 0.95 | 0.16823 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11317 | 0.95 | 0.16823 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11198 | 0.95 | 0.172958 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUaCAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 53062 | 0.93 | 0.221078 |
Target: 5'- uUGGAUGAAAGCAAAGAUgAUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAgUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 53202 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 42348 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 10851 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 42417 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 104995 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 119454 | 0.92 | 0.245909 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 104867 | 0.92 | 0.266016 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105253 | 0.91 | 0.273009 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 120073 | 0.9 | 0.310187 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUAUUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 104989 | 0.9 | 0.334284 |
Target: 5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGac -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105128 | 0.89 | 0.351096 |
Target: 5'- --uACGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- accUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 41930 | 0.89 | 0.368499 |
Target: 5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUaCAUGac -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 42289 | 0.88 | 0.405039 |
Target: 5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACA---UGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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