Results 1 - 20 of 73 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8512 | 5' | -45.3 | NC_002169.1 | + | 53154 | 1.11 | 0.020931 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105117 | 1.11 | 0.020931 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105662 | 1.09 | 0.027447 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUGu -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 71668 | 1.06 | 0.04052 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 52696 | 1.06 | 0.04052 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 53074 | 1.06 | 0.041747 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11604 | 1.05 | 0.045652 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 119582 | 1.05 | 0.045652 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 120201 | 1.05 | 0.045652 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 42030 | 1.05 | 0.045652 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 53282 | 1.01 | 0.080004 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11202 | 1.01 | 0.080004 |
Target: 5'- uUGGACGAAAGCAAAGAUCAUGUAUUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11098 | 1.01 | 0.084814 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 52944 | 1.01 | 0.084814 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 119633 | 1.01 | 0.084814 |
Target: 5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11602 | 1 | 0.089899 |
Target: 5'- gUGGACGAAAGCAAAGAUCGUGUAUUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 119760 | 1 | 0.089899 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 71795 | 0.96 | 0.150456 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUACUGa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 11070 | 0.96 | 0.150456 |
Target: 5'- -cGACGAAAGCAAAGAUCAUGUACUa -3' miRNA: 3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' |
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8512 | 5' | -45.3 | NC_002169.1 | + | 105571 | 0.96 | 0.150456 |
Target: 5'- uUGGAUGAAAGCAAAGAUCGUGUAUUa -3' miRNA: 3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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