miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 1188 0.66 0.999962
Target:  5'- cGGGCGAGAGCGGAGuuuuacguuuuaAUCuuuccuuuaguucUGUACUa -3'
miRNA:   3'- aCCUGCUUUCGUUUC------------UAGu------------ACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10551 0.71 0.993951
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10677 0.74 0.974082
Target:  5'- -cGAUGAAAGCAAAGAUC--GUugUGg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGuaCAugAC- -5'
8512 5' -45.3 NC_002169.1 + 10743 0.96 0.150456
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10851 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10870 0.85 0.54871
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10971 0.75 0.942865
Target:  5'- -cGACGAAA-CAAAGAUCAUGUAUUa -3'
miRNA:   3'- acCUGCUUUcGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10976 0.82 0.704516
Target:  5'- -cGACGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11070 0.96 0.150456
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11098 1.01 0.084814
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 11198 0.95 0.172958
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11202 1.01 0.080004
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11317 0.95 0.16823
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11330 0.81 0.747723
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACau---GAC- -5'
8512 5' -45.3 NC_002169.1 + 11443 0.8 0.778893
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11476 0.79 0.845575
Target:  5'- -cGAUGAAAGCAAAcAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11602 1 0.089899
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11604 1.05 0.045652
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11730 0.81 0.726314
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 37286 0.66 0.999954
Target:  5'- cGGAuCGAcgGAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAG-UACaUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.