miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 105534 0.86 0.474163
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10851 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119454 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 104867 0.92 0.266016
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUagGCUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCA--UGAC- -5'
8512 5' -45.3 NC_002169.1 + 120073 0.9 0.310187
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 104989 0.9 0.334284
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 105128 0.89 0.351096
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42220 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGU-UUGg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuGAC- -5'
8512 5' -45.3 NC_002169.1 + 42289 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACA---UGAc -5'
8512 5' -45.3 NC_002169.1 + 105238 0.95 0.16823
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11317 0.95 0.16823
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11070 0.96 0.150456
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 52696 1.06 0.04052
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 71668 1.06 0.04052
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 53074 1.06 0.041747
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 42030 1.05 0.045652
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11202 1.01 0.080004
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119633 1.01 0.084814
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 11602 1 0.089899
Target:  5'- gUGGACGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 10743 0.96 0.150456
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.