miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 37286 0.66 0.999954
Target:  5'- cGGAuCGAcgGAGCAGGGAUCgAUG-ACg- -3'
miRNA:   3'- aCCU-GCU--UUCGUUUCUAG-UACaUGac -5'
8512 5' -45.3 NC_002169.1 + 105366 0.87 0.433899
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105253 0.91 0.273009
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105117 1.11 0.020931
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 101920 0.68 0.999495
Target:  5'- cGGACGAAAGCGugccGAUCAaugacgacGUGCa- -3'
miRNA:   3'- aCCUGCUUUCGUuu--CUAGUa-------CAUGac -5'
8512 5' -45.3 NC_002169.1 + 64769 0.69 0.998794
Target:  5'- uUGGGCGAcuuGGGCAucGGUCGuuUGU-CUGa -3'
miRNA:   3'- -ACCUGCU---UUCGUuuCUAGU--ACAuGAC- -5'
8512 5' -45.3 NC_002169.1 + 10677 0.74 0.974082
Target:  5'- -cGAUGAAAGCAAAGAUC--GUugUGg -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGuaCAugAC- -5'
8512 5' -45.3 NC_002169.1 + 52823 0.78 0.878796
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11730 0.81 0.726314
Target:  5'- -cGAUGAAAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119484 0.86 0.505552
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUAcAUGac -5'
8512 5' -45.3 NC_002169.1 + 105483 0.84 0.581816
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11330 0.81 0.747723
Target:  5'- -cGACGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACau---GAC- -5'
8512 5' -45.3 NC_002169.1 + 80175 0.67 0.999917
Target:  5'- -uGACGuuguuuauuAAAGCGuuGAUCAUGUGCa- -3'
miRNA:   3'- acCUGC---------UUUCGUuuCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 10870 0.85 0.54871
Target:  5'- uUGGACG-AAGCAAAGAUCGaGUACUa -3'
miRNA:   3'- -ACCUGCuUUCGUUUCUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 84422 0.67 0.999917
Target:  5'- aGGAUGcGAGUucAGGAUCGaaUGUACUa -3'
miRNA:   3'- aCCUGCuUUCGu-UUCUAGU--ACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 11443 0.8 0.778893
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42029 0.85 0.5378
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 41930 0.89 0.368499
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGac -5'
8512 5' -45.3 NC_002169.1 + 118886 0.68 0.999756
Target:  5'- -cGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- acCUGCUUUCGuu--UCUAGU------------ACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 129820 0.69 0.998524
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGUACAUGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.