miRNA display CGI


Results 21 - 40 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 41902 0.79 0.836667
Target:  5'- uUGGACGAAAGCAAA-AUCGaGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUaCAUGAc -5'
8512 5' -45.3 NC_002169.1 + 41930 0.89 0.368499
Target:  5'- uUGGACGAAAGCAAAGAUCGaGUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUaCAUGac -5'
8512 5' -45.3 NC_002169.1 + 42029 0.85 0.5378
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 42030 1.05 0.045652
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42158 0.96 0.154732
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 42220 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGU-UUGg -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAuGAC- -5'
8512 5' -45.3 NC_002169.1 + 42289 0.88 0.405039
Target:  5'- uUGGACGAAAGCAAAGAUUGUGUuugACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACA---UGAc -5'
8512 5' -45.3 NC_002169.1 + 42348 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 42417 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 52696 1.06 0.04052
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 52817 0.84 0.592949
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAgUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 52823 0.78 0.878796
Target:  5'- -cGAUGAAAGCAAAcAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 52934 0.69 0.999366
Target:  5'- -cGAUGAAAGCAAAGAUUGaGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUaCAUGac -5'
8512 5' -45.3 NC_002169.1 + 52944 1.01 0.084814
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 53062 0.93 0.221078
Target:  5'- uUGGAUGAAAGCAAAGAUgAUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAgUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 53074 1.06 0.041747
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 53154 1.11 0.020931
Target:  5'- uUGGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 53202 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 53282 1.01 0.080004
Target:  5'- -cGACGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 58318 0.66 0.999987
Target:  5'- cGGACGcgguuauagggaAAGGCAAAGuAUC-UGUcGCUGa -3'
miRNA:   3'- aCCUGC------------UUUCGUUUC-UAGuACA-UGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.