miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8512 5' -45.3 NC_002169.1 + 129820 0.69 0.998524
Target:  5'- cUGaACGAAcGCGacGAGAUCGUGUGCa- -3'
miRNA:   3'- -ACcUGCUUuCGU--UUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 120201 1.05 0.045652
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 120073 0.9 0.310187
Target:  5'- -cGACGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119760 1 0.089899
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 119633 1.01 0.084814
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 119582 1.05 0.045652
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119484 0.86 0.505552
Target:  5'- uUGGACGAAAGCAAAGAUCGUcUAUg- -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUAcAUGac -5'
8512 5' -45.3 NC_002169.1 + 119454 0.92 0.245909
Target:  5'- -cGAUGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 119356 0.79 0.818191
Target:  5'- -cGAUaAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGcUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 118886 0.68 0.999756
Target:  5'- -cGAUGAGAGCcuguAGAUCGgccgugaauuguUGUGCUGa -3'
miRNA:   3'- acCUGCUUUCGuu--UCUAGU------------ACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 105662 1.09 0.027447
Target:  5'- uUGGACGAAAGCAAAGAUCGUGUACUGu -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAC- -5'
8512 5' -45.3 NC_002169.1 + 105571 0.96 0.150456
Target:  5'- uUGGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105534 0.86 0.474163
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105483 0.84 0.581816
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUACUu -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105443 0.83 0.648939
Target:  5'- -cGACGAAAGCAAAGAUUGUGUAUg- -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 105366 0.87 0.433899
Target:  5'- uUGGACaAAAGCAAAGAUCGUGUAUUa -3'
miRNA:   3'- -ACCUGcUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105353 0.75 0.956563
Target:  5'- uUGGAUGAAAGCAAAcAUgAUGUACc- -3'
miRNA:   3'- -ACCUGCUUUCGUUUcUAgUACAUGac -5'
8512 5' -45.3 NC_002169.1 + 105253 0.91 0.273009
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105238 0.95 0.16823
Target:  5'- -cGACGAAAGCAAAGAUCGUGUACUa -3'
miRNA:   3'- acCUGCUUUCGUUUCUAGUACAUGAc -5'
8512 5' -45.3 NC_002169.1 + 105128 0.89 0.351096
Target:  5'- --uACGAAAGCAAAGAUCAUGUACUa -3'
miRNA:   3'- accUGCUUUCGUUUCUAGUACAUGAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.