miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 5' -43.5 NC_002169.1 + 71796 1.08 0.045554
Target:  5'- uCGAUGAAAGCAAAGAUCGUGUACUGAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105254 1.08 0.046956
Target:  5'- uCGAUGAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 42158 1.07 0.054618
Target:  5'- aGAUGAAAGCAAAGAUCGUGUACUGAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105569 1.01 0.11826
Target:  5'- gGAUGAAAGCAAAGAUCGUGUAUUAAa -3'
miRNA:   3'- gCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105533 1 0.125337
Target:  5'- uCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 52816 0.99 0.144778
Target:  5'- uCGAUGAAAGCAAAGAUgGUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAgCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 119761 0.98 0.162273
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUGAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105237 0.98 0.166936
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11444 0.98 0.171718
Target:  5'- uCGAUGAAAGCAAAGAUUGUGUAUUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 42030 0.97 0.1975
Target:  5'- uCGAUGAAAGCAAAGAUCGUGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 120199 0.96 0.208727
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 119580 0.96 0.208727
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11316 0.96 0.214544
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 11731 0.96 0.226596
Target:  5'- uCGAUGAAAGCAAAGAUCGaGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 42418 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 10850 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 104996 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 119453 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 53203 0.94 0.266216
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11602 0.94 0.266216
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.