miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 5' -43.5 NC_002169.1 + 10551 0.88 0.532941
Target:  5'- aGAUGAAAGCAAAcAUUGUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUcUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 10678 0.84 0.702574
Target:  5'- uCGAUGAAAGCAAAGAUCGUuGUGg--- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCA-CAUgauu -5'
8513 5' -43.5 NC_002169.1 + 10742 0.85 0.657347
Target:  5'- uCGAcGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 10850 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 10869 0.74 0.99135
Target:  5'- uGGacGAAGCAAAGAUCGaGUACUAGa -3'
miRNA:   3'- gCUacUUUCGUUUCUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 10977 0.83 0.746615
Target:  5'- uCGAcGAAAGCAAAcAUCGUGUACUAGa -3'
miRNA:   3'- -GCUaCUUUCGUUUcUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11069 0.84 0.691347
Target:  5'- uCGAcGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11096 0.87 0.566376
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 11196 0.84 0.713727
Target:  5'- gGAcGAAAGCAAAGAUCGaGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11204 0.78 0.939362
Target:  5'- gGAcGAAAGCAAAGAUCaUGUAUUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11316 0.96 0.214544
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 11331 0.77 0.965831
Target:  5'- uCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACau---GAUu -5'
8513 5' -43.5 NC_002169.1 + 11444 0.98 0.171718
Target:  5'- uCGAUGAAAGCAAAGAUUGUGUAUUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11475 0.8 0.879949
Target:  5'- uCGAUGAAAGCAAAcAUCaUGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUcUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11602 0.94 0.266216
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 11604 0.89 0.468454
Target:  5'- gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 11731 0.96 0.226596
Target:  5'- uCGAUGAAAGCAAAGAUCGaGUACUAGa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 41904 0.68 0.999988
Target:  5'- gGAcGAAAGCAAA-AUCGaGUACUAAa -3'
miRNA:   3'- gCUaCUUUCGUUUcUAGCaCAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 41928 0.73 0.994558
Target:  5'- gGAcGAAAGCAAAGAUCGaGUAUg-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCaCAUGauu -5'
8513 5' -43.5 NC_002169.1 + 42030 0.97 0.1975
Target:  5'- uCGAUGAAAGCAAAGAUCGUGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCACAUGauu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.