miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8513 5' -43.5 NC_002169.1 + 105130 0.8 0.871915
Target:  5'- ---cGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- gcuaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 119635 0.87 0.566376
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACc-- -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 10742 0.85 0.657347
Target:  5'- uCGAcGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11069 0.84 0.691347
Target:  5'- uCGAcGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 53156 0.83 0.73576
Target:  5'- gGAcGAAAGCAAAGAUCaUGUACUGAa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 52698 0.82 0.77838
Target:  5'- gGAcGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 71670 0.82 0.77838
Target:  5'- gGAcGAAAGCAAAGAUCaUGUACUAGa -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105442 0.82 0.798763
Target:  5'- uCGAcGAAAGCAAAGAUUGUGUAUg-- -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 52933 0.8 0.871915
Target:  5'- uCGAUGAAAGCAAAGAUUGaGUAUg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGCaCAUGauu -5'
8513 5' -43.5 NC_002169.1 + 104988 0.88 0.532941
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUGCg-- -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGauu -5'
8513 5' -43.5 NC_002169.1 + 10551 0.88 0.532941
Target:  5'- aGAUGAAAGCAAAcAUUGUGUACUAAa -3'
miRNA:   3'- gCUACUUUCGUUUcUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11604 0.89 0.468454
Target:  5'- gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 52816 0.99 0.144778
Target:  5'- uCGAUGAAAGCAAAGAUgGUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAgCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 105237 0.98 0.166936
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 11316 0.96 0.214544
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 10850 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 119453 0.95 0.245745
Target:  5'- uCGAUGAAAGCAAAGAUCaUGUACUAAa -3'
miRNA:   3'- -GCUACUUUCGUUUCUAGcACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 42032 0.94 0.266216
Target:  5'- gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- gCUaCUUUCGUUUCUAGCACAUGAUu -5'
8513 5' -43.5 NC_002169.1 + 119355 0.94 0.280617
Target:  5'- uCGAUaAAAGCAAAGAUCGUGUACUAAa -3'
miRNA:   3'- -GCUAcUUUCGUUUCUAGCACAUGAUU- -5'
8513 5' -43.5 NC_002169.1 + 120072 0.91 0.398646
Target:  5'- uCGAcGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -GCUaCUUUCGUUUCUAGCACAUGAUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.