miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 3' -43.5 NC_002169.1 + 129655 0.66 0.999999
Target:  5'- -aUGGUgcACACGAUCUcgucGCgUUCGUUc -3'
miRNA:   3'- aaAUCA--UGUGCUAGAaa--CGaAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 108374 0.66 0.999999
Target:  5'- ---uGUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- aaauCAUGuGCUAGaaACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 27548 0.66 0.999999
Target:  5'- ----uUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- aaaucAUGUGCUAGaaaCGaa-AGCAG- -5'
8514 3' -43.5 NC_002169.1 + 59833 0.66 0.999998
Target:  5'- ---uGU-CGCGAUCgaugUUGCcguUUUCGUCg -3'
miRNA:   3'- aaauCAuGUGCUAGa---AACG---AAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 29673 0.67 0.999997
Target:  5'- -----aACGCGAUCggUUGCcUUUUGUCu -3'
miRNA:   3'- aaaucaUGUGCUAGa-AACG-AAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10326 0.67 0.999989
Target:  5'- ---cGUACAUGAacaaagcaUCUUUGUcaUCGUCa -3'
miRNA:   3'- aaauCAUGUGCU--------AGAAACGaaAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11559 0.68 0.999971
Target:  5'- -----aACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 11281 0.7 0.999707
Target:  5'- aUUUAaUACACaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AAAUcAUGUGcUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 10520 0.7 0.999623
Target:  5'- -----cACaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUG-UGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 31417 0.7 0.999623
Target:  5'- ---cGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- aaauCAUGUGCUAGAa-----ACgAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 104956 0.72 0.997411
Target:  5'- -aUAGU-CA--AUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUCAuGUgcUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 10713 0.74 0.991683
Target:  5'- uUUUAGUACACaAUgUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AAAUCAUGUGcUAgAAACGAA----------AGCAG- -5'
8514 3' -43.5 NC_002169.1 + 105145 0.75 0.985423
Target:  5'- -----cACAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- aaaucaUGUGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 42378 0.76 0.966621
Target:  5'- -----aACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaucaUGUGcUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 52898 0.78 0.929336
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUCAUGUGcUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 42453 0.79 0.910487
Target:  5'- --aAGUcaaACACaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCA---UGUGcUAGAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 105322 0.8 0.881235
Target:  5'- --aAGUACACaAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUCAUGUGcUAgAAACGAAAGCAG- -5'
8514 3' -43.5 NC_002169.1 + 105690 0.8 0.873213
Target:  5'- ----aUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaaucAUGUGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 105407 0.81 0.838504
Target:  5'- cUUUAaUACACGAUCUUUGCUUUCaUCc -3'
miRNA:   3'- -AAAUcAUGUGCUAGAAACGAAAGcAG- -5'
8514 3' -43.5 NC_002169.1 + 11636 0.81 0.838504
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- aaAUCAUGUGCUAgAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.