Results 1 - 20 of 66 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8514 | 5' | -42.5 | NC_002169.1 | + | 26602 | 0.66 | 1 |
Target: 5'- cGGGCGugucGCGGAGcgcuacgauaGUCGUGUAUUu -3' miRNA: 3'- aCCUGUuuu-CGUUUC----------UAGCACAUAAu -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 42158 | 0.84 | 0.760952 |
Target: 5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 105253 | 0.84 | 0.750139 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 105366 | 1.09 | 0.048493 |
Target: 5'- uUGGACAAAAGCAAAGAUCGUGUAUUAa -3' miRNA: 3'- -ACCUGUUUUCGUUUCUAGCACAUAAU- -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 42348 | 0.71 | 0.999753 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGcACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 42417 | 0.71 | 0.999753 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGcACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 104995 | 0.71 | 0.999753 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGcACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 11730 | 0.73 | 0.997638 |
Target: 5'- -cGAUGAAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3' miRNA: 3'- acCUGUUUUCGUUUCUAGC-------------ACAUAAU- -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 10976 | 0.76 | 0.988112 |
Target: 5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUcUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 104925 | 0.84 | 0.771619 |
Target: 5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3' miRNA: 3'- acCUGUUUUCGUUUCUAGcACAUAAU- -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 10870 | 0.79 | 0.946999 |
Target: 5'- uUGGAC-GAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3' miRNA: 3'- -ACCUGuUUUCGUUUCUAGC-------------ACAUAAU- -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 10677 | 0.75 | 0.98968 |
Target: 5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGC-ACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 64769 | 0.66 | 1 |
Target: 5'- uUGGGCGAcuuGGGCAucGGUCGUuUGUc- -3' miRNA: 3'- -ACCUGUU---UUCGUuuCUAGCAcAUAau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 105483 | 0.81 | 0.87582 |
Target: 5'- uUGGACGAAAGCAAAcAUUGUGUAc-- -3' miRNA: 3'- -ACCUGUUUUCGUUUcUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 37286 | 0.67 | 1 |
Target: 5'- cGGAuCGAcgGAGCAGGGAUCGaUGa---- -3' miRNA: 3'- aCCU-GUU--UUCGUUUCUAGC-ACauaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 53062 | 0.74 | 0.996648 |
Target: 5'- uUGGAUGAAAGCAAAGAUgaUGUAc-- -3' miRNA: 3'- -ACCUGUUUUCGUUUCUAgcACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 11330 | 0.83 | 0.812577 |
Target: 5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3' miRNA: 3'- acCUGUUUUCGUUUCUAGCACaUAAu -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 71795 | 0.84 | 0.750139 |
Target: 5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 52823 | 0.7 | 0.99994 |
Target: 5'- -cGAUGAAAGCAAAcAUCGUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUcUAGCACAUaau -5' |
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8514 | 5' | -42.5 | NC_002169.1 | + | 53202 | 0.71 | 0.999753 |
Target: 5'- -cGAUGAAAGCAAAGAUCaUGUAc-- -3' miRNA: 3'- acCUGUUUUCGUUUCUAGcACAUaau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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