miRNA display CGI


Results 21 - 40 of 66 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8514 5' -42.5 NC_002169.1 + 52817 0.75 0.98968
Target:  5'- -cGAUGAAAGCAAAGAUgGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAgCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10677 0.75 0.98968
Target:  5'- -cGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGC-ACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10976 0.76 0.988112
Target:  5'- -cGACGAAAGCAAAcAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53282 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11070 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10743 0.77 0.977364
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 10870 0.79 0.946999
Target:  5'- uUGGAC-GAAGCAAAGAUCGaguacuagaguuuUGUAUUGc -3'
miRNA:   3'- -ACCUGuUUUCGUUUCUAGC-------------ACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 104797 0.8 0.931558
Target:  5'- uUGGACGAAAGCAAAGAUUGacUAUg- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGCacAUAau -5'
8514 5' -42.5 NC_002169.1 + 105483 0.81 0.87582
Target:  5'- uUGGACGAAAGCAAAcAUUGUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUcUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11330 0.83 0.812577
Target:  5'- -cGACGAAAGCAAAGAUCGUGcAUUu -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACaUAAu -5'
8514 5' -42.5 NC_002169.1 + 104925 0.84 0.771619
Target:  5'- -cGACGAAAGCAAAGAUCaUGUAUUGa -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGcACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 42158 0.84 0.760952
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 105253 0.84 0.750139
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 71795 0.84 0.750139
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 119356 0.87 0.648455
Target:  5'- -cGAUAAAAGCAAAGAUCGUGUAc-- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUaau -5'
8514 5' -42.5 NC_002169.1 + 11443 0.87 0.613811
Target:  5'- -cGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAAU- -5'
8514 5' -42.5 NC_002169.1 + 42029 0.88 0.602284
Target:  5'- -cGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- acCUGUUUUCGUUUCUAGCACAUAau -5'
8514 5' -42.5 NC_002169.1 + 52696 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 53154 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5'
8514 5' -42.5 NC_002169.1 + 71668 0.88 0.602284
Target:  5'- uUGGACGAAAGCAAAGAUCaUGUAc-- -3'
miRNA:   3'- -ACCUGUUUUCGUUUCUAGcACAUaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.