miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8517 3' -45 NC_002169.1 + 108095 1.14 0.01647
Target:  5'- cAGAACGACACCGCUAAACAAAACUCCu -3'
miRNA:   3'- -UCUUGCUGUGGCGAUUUGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 105985 0.77 0.933744
Target:  5'- uAGAugGGCGCCGCaauGCAAGuuuGCUCa -3'
miRNA:   3'- -UCUugCUGUGGCGauuUGUUU---UGAGg -5'
8517 3' -45 NC_002169.1 + 115914 0.76 0.957403
Target:  5'- aAGAuuuCGAUACCGCgcggcAAGCGAGACggCCg -3'
miRNA:   3'- -UCUu--GCUGUGGCGa----UUUGUUUUGa-GG- -5'
8517 3' -45 NC_002169.1 + 76507 0.75 0.968406
Target:  5'- -cGACGAU-CCGCUuuGCAAuGCUCCg -3'
miRNA:   3'- ucUUGCUGuGGCGAuuUGUUuUGAGG- -5'
8517 3' -45 NC_002169.1 + 53320 0.75 0.971577
Target:  5'- -cGACGGCGCCGCggguuACGAu-CUCCa -3'
miRNA:   3'- ucUUGCUGUGGCGauu--UGUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 134447 0.75 0.971577
Target:  5'- aAGGACGACAgCGUcGAuggcauuuACAAGACUCUa -3'
miRNA:   3'- -UCUUGCUGUgGCGaUU--------UGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 89791 0.73 0.989093
Target:  5'- uGGuuACGGCGCCGCUGAguaucgaGCAAAGCg-- -3'
miRNA:   3'- -UCu-UGCUGUGGCGAUU-------UGUUUUGagg -5'
8517 3' -45 NC_002169.1 + 108283 0.72 0.992995
Target:  5'- cGAACGAaucgACCGCgcAACAAAaguaagaacgucGCUCCu -3'
miRNA:   3'- uCUUGCUg---UGGCGauUUGUUU------------UGAGG- -5'
8517 3' -45 NC_002169.1 + 41484 0.72 0.995621
Target:  5'- uGAACGAgACCGUaGGACAugGCcgCCg -3'
miRNA:   3'- uCUUGCUgUGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 120493 0.71 0.997238
Target:  5'- gAGAACGACGCguuuuuuaguaaauCGCUGGuAguGAAUUCCa -3'
miRNA:   3'- -UCUUGCUGUG--------------GCGAUU-UguUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 48350 0.71 0.998191
Target:  5'- cGAACGGCGCU-CUAGACAuuGACUUg -3'
miRNA:   3'- uCUUGCUGUGGcGAUUUGUu-UUGAGg -5'
8517 3' -45 NC_002169.1 + 52436 0.7 0.998509
Target:  5'- cGGuACGACAUguuuaCUAAACAAAAUUCCg -3'
miRNA:   3'- -UCuUGCUGUGgc---GAUUUGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 80240 0.7 0.998509
Target:  5'- --cACGAUGCCGCUc-ACGAAAC-CCa -3'
miRNA:   3'- ucuUGCUGUGGCGAuuUGUUUUGaGG- -5'
8517 3' -45 NC_002169.1 + 22061 0.7 0.999195
Target:  5'- cGGAACGcgACCGCgAAACGuacacGCUCCu -3'
miRNA:   3'- -UCUUGCugUGGCGaUUUGUuu---UGAGG- -5'
8517 3' -45 NC_002169.1 + 25685 0.7 0.999353
Target:  5'- aGGAGCGACggcgaACCGCcGGGCGucGCcgCCa -3'
miRNA:   3'- -UCUUGCUG-----UGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 41341 0.69 0.999483
Target:  5'- cGGGCGAUGCCGa-GAACAauccAAACUCg -3'
miRNA:   3'- uCUUGCUGUGGCgaUUUGU----UUUGAGg -5'
8517 3' -45 NC_002169.1 + 122924 0.69 0.99959
Target:  5'- -cGACGACGCCGaacaaaUGAGCAcuaguaaaAAACUCg -3'
miRNA:   3'- ucUUGCUGUGGCg-----AUUUGU--------UUUGAGg -5'
8517 3' -45 NC_002169.1 + 60375 0.69 0.999677
Target:  5'- gAGAucauCGACAUCGCcgccgcaaUGAGCAAAAUcgCCa -3'
miRNA:   3'- -UCUu---GCUGUGGCG--------AUUUGUUUUGa-GG- -5'
8517 3' -45 NC_002169.1 + 88852 0.69 0.999747
Target:  5'- gAGAGCGGUGCagGCgagAAACGauGAACUCCa -3'
miRNA:   3'- -UCUUGCUGUGg-CGa--UUUGU--UUUGAGG- -5'
8517 3' -45 NC_002169.1 + 88554 0.69 0.999747
Target:  5'- cGGAugGGCuuuACUGC--GACAcuGCUCCu -3'
miRNA:   3'- -UCUugCUG---UGGCGauUUGUuuUGAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.