miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8517 3' -45 NC_002169.1 + 94388 0.67 0.999974
Target:  5'- --uACGACgGCUGCUAcGCc-AACUCCg -3'
miRNA:   3'- ucuUGCUG-UGGCGAUuUGuuUUGAGG- -5'
8517 3' -45 NC_002169.1 + 77656 0.68 0.999799
Target:  5'- ---uCGACGCCGUUAAACAAAugauuggcggggcAUUCUu -3'
miRNA:   3'- ucuuGCUGUGGCGAUUUGUUU-------------UGAGG- -5'
8517 3' -45 NC_002169.1 + 108147 0.68 0.999804
Target:  5'- cGAGCGAUGCgUGCUAcACAAAuguguGCUCg -3'
miRNA:   3'- uCUUGCUGUG-GCGAUuUGUUU-----UGAGg -5'
8517 3' -45 NC_002169.1 + 134454 0.68 0.999888
Target:  5'- cAGAGCGACG-CGCaUGAGCAuguguuggggucuCUCCa -3'
miRNA:   3'- -UCUUGCUGUgGCG-AUUUGUuuu----------GAGG- -5'
8517 3' -45 NC_002169.1 + 124123 0.67 0.999951
Target:  5'- cGGGGCauCAUCGCgaGAACgAGAGCUCCg -3'
miRNA:   3'- -UCUUGcuGUGGCGa-UUUG-UUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 39943 0.67 0.999964
Target:  5'- --uACGACGCUGCcgaccUAAACGAuuucauGCUCUa -3'
miRNA:   3'- ucuUGCUGUGGCG-----AUUUGUUu-----UGAGG- -5'
8517 3' -45 NC_002169.1 + 81812 0.67 0.999964
Target:  5'- -cGACGACACCGac-GACGAGAUUa- -3'
miRNA:   3'- ucUUGCUGUGGCgauUUGUUUUGAgg -5'
8517 3' -45 NC_002169.1 + 118487 0.67 0.999964
Target:  5'- uAGAugaGACGCUGCUGAuCGGGAgguaugccCUCCu -3'
miRNA:   3'- -UCUug-CUGUGGCGAUUuGUUUU--------GAGG- -5'
8517 3' -45 NC_002169.1 + 55351 0.67 0.999974
Target:  5'- -cGGCGGCAUcgCGCUAuuCGAAugUCUu -3'
miRNA:   3'- ucUUGCUGUG--GCGAUuuGUUUugAGG- -5'
8517 3' -45 NC_002169.1 + 88554 0.69 0.999747
Target:  5'- cGGAugGGCuuuACUGC--GACAcuGCUCCu -3'
miRNA:   3'- -UCUugCUG---UGGCGauUUGUuuUGAGG- -5'
8517 3' -45 NC_002169.1 + 41341 0.69 0.999483
Target:  5'- cGGGCGAUGCCGa-GAACAauccAAACUCg -3'
miRNA:   3'- uCUUGCUGUGGCgaUUUGU----UUUGAGg -5'
8517 3' -45 NC_002169.1 + 25685 0.7 0.999353
Target:  5'- aGGAGCGACggcgaACCGCcGGGCGucGCcgCCa -3'
miRNA:   3'- -UCUUGCUG-----UGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 115914 0.76 0.957403
Target:  5'- aAGAuuuCGAUACCGCgcggcAAGCGAGACggCCg -3'
miRNA:   3'- -UCUu--GCUGUGGCGa----UUUGUUUUGa-GG- -5'
8517 3' -45 NC_002169.1 + 53320 0.75 0.971577
Target:  5'- -cGACGGCGCCGCggguuACGAu-CUCCa -3'
miRNA:   3'- ucUUGCUGUGGCGauu--UGUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 41484 0.72 0.995621
Target:  5'- uGAACGAgACCGUaGGACAugGCcgCCg -3'
miRNA:   3'- uCUUGCUgUGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 120493 0.71 0.997238
Target:  5'- gAGAACGACGCguuuuuuaguaaauCGCUGGuAguGAAUUCCa -3'
miRNA:   3'- -UCUUGCUGUG--------------GCGAUU-UguUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 48350 0.71 0.998191
Target:  5'- cGAACGGCGCU-CUAGACAuuGACUUg -3'
miRNA:   3'- uCUUGCUGUGGcGAUUUGUu-UUGAGg -5'
8517 3' -45 NC_002169.1 + 52436 0.7 0.998509
Target:  5'- cGGuACGACAUguuuaCUAAACAAAAUUCCg -3'
miRNA:   3'- -UCuUGCUGUGgc---GAUUUGUUUUGAGG- -5'
8517 3' -45 NC_002169.1 + 80240 0.7 0.998509
Target:  5'- --cACGAUGCCGCUc-ACGAAAC-CCa -3'
miRNA:   3'- ucuUGCUGUGGCGAuuUGUUUUGaGG- -5'
8517 3' -45 NC_002169.1 + 22061 0.7 0.999195
Target:  5'- cGGAACGcgACCGCgAAACGuacacGCUCCu -3'
miRNA:   3'- -UCUUGCugUGGCGaUUUGUuu---UGAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.