miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8517 3' -45 NC_002169.1 + 2943 0.69 0.999747
Target:  5'- cGAGCG-UGCCGUcgAGACAcGACUCUu -3'
miRNA:   3'- uCUUGCuGUGGCGa-UUUGUuUUGAGG- -5'
8517 3' -45 NC_002169.1 + 18357 0.67 0.999951
Target:  5'- -uGACGACACCgaugaGCUAGACAcaaAGAUUUg -3'
miRNA:   3'- ucUUGCUGUGG-----CGAUUUGU---UUUGAGg -5'
8517 3' -45 NC_002169.1 + 22061 0.7 0.999195
Target:  5'- cGGAACGcgACCGCgAAACGuacacGCUCCu -3'
miRNA:   3'- -UCUUGCugUGGCGaUUUGUuu---UGAGG- -5'
8517 3' -45 NC_002169.1 + 22144 0.66 0.999993
Target:  5'- -uGugGACGCCGUc--AUAGAACUuCCa -3'
miRNA:   3'- ucUugCUGUGGCGauuUGUUUUGA-GG- -5'
8517 3' -45 NC_002169.1 + 24254 0.67 0.999981
Target:  5'- aAGAACGcGCugCGCU--ACAAAGC-Ca -3'
miRNA:   3'- -UCUUGC-UGugGCGAuuUGUUUUGaGg -5'
8517 3' -45 NC_002169.1 + 24307 0.66 0.999993
Target:  5'- uAGGuuCGACAauuaCGCUGAGCAuu-CUCa -3'
miRNA:   3'- -UCUu-GCUGUg---GCGAUUUGUuuuGAGg -5'
8517 3' -45 NC_002169.1 + 25685 0.7 0.999353
Target:  5'- aGGAGCGACggcgaACCGCcGGGCGucGCcgCCa -3'
miRNA:   3'- -UCUUGCUG-----UGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 30320 0.67 0.999981
Target:  5'- -cGACGACGCCGCcgcucACGuuGCcgCCg -3'
miRNA:   3'- ucUUGCUGUGGCGauu--UGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 32431 0.66 0.999995
Target:  5'- -cGGCGACGCCGUgu-ACcGAGCUgucgCCg -3'
miRNA:   3'- ucUUGCUGUGGCGauuUGuUUUGA----GG- -5'
8517 3' -45 NC_002169.1 + 33813 0.66 0.999988
Target:  5'- --uACGACGCCGCuUgucgcuguagugguuGAGCGAGuagagcuGCUCCu -3'
miRNA:   3'- ucuUGCUGUGGCG-A---------------UUUGUUU-------UGAGG- -5'
8517 3' -45 NC_002169.1 + 37824 0.68 0.999804
Target:  5'- uGAACGACACCGUgccucGGAUgcAAUUCa -3'
miRNA:   3'- uCUUGCUGUGGCGa----UUUGuuUUGAGg -5'
8517 3' -45 NC_002169.1 + 39532 0.67 0.999981
Target:  5'- -cGACGGCGgUGCcgaucggcaauaUGAGCGAcGCUCCg -3'
miRNA:   3'- ucUUGCUGUgGCG------------AUUUGUUuUGAGG- -5'
8517 3' -45 NC_002169.1 + 39943 0.67 0.999964
Target:  5'- --uACGACGCUGCcgaccUAAACGAuuucauGCUCUa -3'
miRNA:   3'- ucuUGCUGUGGCG-----AUUUGUUu-----UGAGG- -5'
8517 3' -45 NC_002169.1 + 41341 0.69 0.999483
Target:  5'- cGGGCGAUGCCGa-GAACAauccAAACUCg -3'
miRNA:   3'- uCUUGCUGUGGCgaUUUGU----UUUGAGg -5'
8517 3' -45 NC_002169.1 + 41484 0.72 0.995621
Target:  5'- uGAACGAgACCGUaGGACAugGCcgCCg -3'
miRNA:   3'- uCUUGCUgUGGCGaUUUGUuuUGa-GG- -5'
8517 3' -45 NC_002169.1 + 48185 0.66 0.999995
Target:  5'- gAGAuaGCGGCAUCGC-GGGCA-GAC-CCg -3'
miRNA:   3'- -UCU--UGCUGUGGCGaUUUGUuUUGaGG- -5'
8517 3' -45 NC_002169.1 + 48336 0.67 0.999964
Target:  5'- --cGCGAUGCCGCUAucuCGAu-UUCCg -3'
miRNA:   3'- ucuUGCUGUGGCGAUuu-GUUuuGAGG- -5'
8517 3' -45 NC_002169.1 + 48350 0.71 0.998191
Target:  5'- cGAACGGCGCU-CUAGACAuuGACUUg -3'
miRNA:   3'- uCUUGCUGUGGcGAUUUGUu-UUGAGg -5'
8517 3' -45 NC_002169.1 + 49690 0.66 0.999988
Target:  5'- -cGGCGACGCCGUUGAucugaaACAcguuuauguugagcaGAcGCUCCa -3'
miRNA:   3'- ucUUGCUGUGGCGAUU------UGU---------------UU-UGAGG- -5'
8517 3' -45 NC_002169.1 + 50149 0.67 0.999951
Target:  5'- ----gGACACCGCaUAuacCAAAugUCCu -3'
miRNA:   3'- ucuugCUGUGGCG-AUuu-GUUUugAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.