miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8518 3' -55.5 NC_002169.1 + 125407 0.66 0.922823
Target:  5'- cGGGAGCGGgcuCGACGuugaaagcggguACGUcGUcgaUGCCCu -3'
miRNA:   3'- -CCCUCGCU---GCUGC------------UGCGaUA---ACGGGu -5'
8518 3' -55.5 NC_002169.1 + 117579 0.66 0.917182
Target:  5'- cGGcGGCGACGACGACGacCUcaaaaaccGUUGUCUc -3'
miRNA:   3'- -CCcUCGCUGCUGCUGC--GA--------UAACGGGu -5'
8518 3' -55.5 NC_002169.1 + 2144 0.66 0.917182
Target:  5'- gGGGuacGCGuCGACGACGCcgcaauaCCCAc -3'
miRNA:   3'- -CCCu--CGCuGCUGCUGCGauaac--GGGU- -5'
8518 3' -55.5 NC_002169.1 + 19198 0.66 0.905185
Target:  5'- --cGGCGuCGACGGCuaucGCUAUcggGCCCAc -3'
miRNA:   3'- cccUCGCuGCUGCUG----CGAUAa--CGGGU- -5'
8518 3' -55.5 NC_002169.1 + 85735 0.66 0.905185
Target:  5'- aGGGGCGcaaauuCGACGcGCGCaucgacacuUUGCCCAc -3'
miRNA:   3'- cCCUCGCu-----GCUGC-UGCGau-------AACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 34509 0.67 0.892243
Target:  5'- ---uGCGGCGGCGGCGCcGUcGCCg- -3'
miRNA:   3'- cccuCGCUGCUGCUGCGaUAaCGGgu -5'
8518 3' -55.5 NC_002169.1 + 53624 0.67 0.885426
Target:  5'- cGGcGGCGGCGACGAC-CUGauacUUGgCCGc -3'
miRNA:   3'- -CCcUCGCUGCUGCUGcGAU----AACgGGU- -5'
8518 3' -55.5 NC_002169.1 + 46443 0.67 0.883337
Target:  5'- gGGuGAGCG-CgGACGAUGUUcugcaucuucugcgAUUGCCCGc -3'
miRNA:   3'- -CC-CUCGCuG-CUGCUGCGA--------------UAACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 92913 0.67 0.883337
Target:  5'- aGGAgGCGACGACGAcaaagcaauCGCaGUuuuuuuaguuuuuuUGCCCGu -3'
miRNA:   3'- cCCU-CGCUGCUGCU---------GCGaUA--------------ACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 106137 0.67 0.876948
Target:  5'- cGGGAGCGAUGAUGAUGaggaaa-CCGa -3'
miRNA:   3'- -CCCUCGCUGCUGCUGCgauaacgGGU- -5'
8518 3' -55.5 NC_002169.1 + 28047 0.67 0.85595
Target:  5'- cGGAcgagGCGAuCGACG-CGCUcgUGCCg- -3'
miRNA:   3'- cCCU----CGCU-GCUGCuGCGAuaACGGgu -5'
8518 3' -55.5 NC_002169.1 + 95491 0.67 0.85595
Target:  5'- ---cGCGugGACGACGCgccauCCCAa -3'
miRNA:   3'- cccuCGCugCUGCUGCGauaacGGGU- -5'
8518 3' -55.5 NC_002169.1 + 62305 0.68 0.848057
Target:  5'- ----cCGACGACGACG-UAUUGCUCAg -3'
miRNA:   3'- cccucGCUGCUGCUGCgAUAACGGGU- -5'
8518 3' -55.5 NC_002169.1 + 55632 0.68 0.848057
Target:  5'- -cGAGCGACGACGGauagcuuuuUGUUGUUGUCgAa -3'
miRNA:   3'- ccCUCGCUGCUGCU---------GCGAUAACGGgU- -5'
8518 3' -55.5 NC_002169.1 + 66915 0.68 0.848057
Target:  5'- uGGucuCGACGACGGCGCU---GUCCAu -3'
miRNA:   3'- cCCuc-GCUGCUGCUGCGAuaaCGGGU- -5'
8518 3' -55.5 NC_002169.1 + 75524 0.68 0.839966
Target:  5'- uGGAGaCGACGACGACGacgacgauaCUAUUGUg-- -3'
miRNA:   3'- cCCUC-GCUGCUGCUGC---------GAUAACGggu -5'
8518 3' -55.5 NC_002169.1 + 1980 0.68 0.839966
Target:  5'- uGGGuauuGCGGCGucGCGACGCguac-CCCAa -3'
miRNA:   3'- -CCCu---CGCUGC--UGCUGCGauaacGGGU- -5'
8518 3' -55.5 NC_002169.1 + 92730 0.68 0.831684
Target:  5'- -cGAGuCGACGACGGCGCggaacgucUUGCgCAu -3'
miRNA:   3'- ccCUC-GCUGCUGCUGCGau------AACGgGU- -5'
8518 3' -55.5 NC_002169.1 + 25685 0.68 0.814581
Target:  5'- aGGAGCGACGGCGAacCGCcgggcGUcGCCg- -3'
miRNA:   3'- cCCUCGCUGCUGCU--GCGa----UAaCGGgu -5'
8518 3' -55.5 NC_002169.1 + 40179 0.69 0.796811
Target:  5'- ---cGCGGCGGCGACGaaaaaGCCCAu -3'
miRNA:   3'- cccuCGCUGCUGCUGCgauaaCGGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.