Results 1 - 20 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 109910 | 1.11 | 0.00238 |
Target: 5'- cGGGAGCGACGACGACGCUAUUGCCCAc -3' miRNA: 3'- -CCCUCGCUGCUGCUGCGAUAACGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 43474 | 0.73 | 0.537503 |
Target: 5'- gGGGGGCGugGGCGAaCGUUucacGCUCAg -3' miRNA: 3'- -CCCUCGCugCUGCU-GCGAuaa-CGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 124927 | 0.72 | 0.618676 |
Target: 5'- uGGGGGCGGCGGCGGCgGCggcgGCgaCAg -3' miRNA: 3'- -CCCUCGCUGCUGCUG-CGauaaCGg-GU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 125733 | 0.72 | 0.618676 |
Target: 5'- -cGAGUGGCGGCGACGCgcgaagGCgCCGa -3' miRNA: 3'- ccCUCGCUGCUGCUGCGauaa--CG-GGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 1286 | 0.72 | 0.628944 |
Target: 5'- --cGGCGACGGCGGCaGCggaaauugUGCCCAg -3' miRNA: 3'- cccUCGCUGCUGCUG-CGaua-----ACGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 74491 | 0.7 | 0.738236 |
Target: 5'- uGGGuucGuCGACGACGACGCcuuuauauuguaGUUGCCUg -3' miRNA: 3'- -CCCu--C-GCUGCUGCUGCGa-----------UAACGGGu -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 97060 | 0.7 | 0.749921 |
Target: 5'- --cGGUGuCGACGACGCUGccggugaUGCCCAu -3' miRNA: 3'- cccUCGCuGCUGCUGCGAUa------ACGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 92773 | 0.7 | 0.700426 |
Target: 5'- -cGAGCGucuugagaccgcACG-CGACGCUGUgGCCCAu -3' miRNA: 3'- ccCUCGC------------UGCuGCUGCGAUAaCGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 1564 | 0.7 | 0.749921 |
Target: 5'- cGGcGGUGGCGGCGGCGCguaagAUUGuUCCGc -3' miRNA: 3'- -CCcUCGCUGCUGCUGCGa----UAAC-GGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 39544 | 0.69 | 0.759545 |
Target: 5'- uGGcGGCGAUGACGACgGCgg-UGCCg- -3' miRNA: 3'- -CCcUCGCUGCUGCUG-CGauaACGGgu -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 15978 | 0.69 | 0.769055 |
Target: 5'- cGGcGGCGgucACGACGACGCUGUcGUCaCAc -3' miRNA: 3'- -CCcUCGC---UGCUGCUGCGAUAaCGG-GU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 63303 | 0.69 | 0.778442 |
Target: 5'- -aGAGCGGCGucuagagcuGCGGCGCUugcGUggccUGCCCGg -3' miRNA: 3'- ccCUCGCUGC---------UGCUGCGA---UA----ACGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 40179 | 0.69 | 0.796811 |
Target: 5'- ---cGCGGCGGCGACGaaaaaGCCCAu -3' miRNA: 3'- cccuCGCUGCUGCUGCgauaaCGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 55632 | 0.68 | 0.848057 |
Target: 5'- -cGAGCGACGACGGauagcuuuuUGUUGUUGUCgAa -3' miRNA: 3'- ccCUCGCUGCUGCU---------GCGAUAACGGgU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 62305 | 0.68 | 0.848057 |
Target: 5'- ----cCGACGACGACG-UAUUGCUCAg -3' miRNA: 3'- cccucGCUGCUGCUGCgAUAACGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 25685 | 0.68 | 0.814581 |
Target: 5'- aGGAGCGACGGCGAacCGCcgggcGUcGCCg- -3' miRNA: 3'- cCCUCGCUGCUGCU--GCGa----UAaCGGgu -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 1980 | 0.68 | 0.839966 |
Target: 5'- uGGGuauuGCGGCGucGCGACGCguac-CCCAa -3' miRNA: 3'- -CCCu---CGCUGC--UGCUGCGauaacGGGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 75524 | 0.68 | 0.839966 |
Target: 5'- uGGAGaCGACGACGACGacgacgauaCUAUUGUg-- -3' miRNA: 3'- cCCUC-GCUGCUGCUGC---------GAUAACGggu -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 92730 | 0.68 | 0.831684 |
Target: 5'- -cGAGuCGACGACGGCGCggaacgucUUGCgCAu -3' miRNA: 3'- ccCUC-GCUGCUGCUGCGau------AACGgGU- -5' |
|||||||
8518 | 3' | -55.5 | NC_002169.1 | + | 66915 | 0.68 | 0.848057 |
Target: 5'- uGGucuCGACGACGGCGCU---GUCCAu -3' miRNA: 3'- cCCuc-GCUGCUGCUGCGAuaaCGGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home