Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8520 | 3' | -48.7 | NC_002169.1 | + | 112251 | 1.09 | 0.01349 |
Target: 5'- gCAACGUUCACAACAGCCUCAACGUCGu -3' miRNA: 3'- -GUUGCAAGUGUUGUCGGAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 91702 | 0.73 | 0.901631 |
Target: 5'- aCAACGaUgGCGACGGCgUCGuCGUCGa -3' miRNA: 3'- -GUUGCaAgUGUUGUCGgAGUuGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 6904 | 0.73 | 0.920552 |
Target: 5'- uCGACGUcgGCAGgGGCaUCGACGUCGg -3' miRNA: 3'- -GUUGCAagUGUUgUCGgAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 89236 | 0.72 | 0.93184 |
Target: 5'- -cAUGUUUACGACGGCguuUUCGACGUCc -3' miRNA: 3'- guUGCAAGUGUUGUCG---GAGUUGCAGc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 79408 | 0.71 | 0.951235 |
Target: 5'- uCGACGagCACGGCGucGuCUUCGACGUCGg -3' miRNA: 3'- -GUUGCaaGUGUUGU--C-GGAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 123812 | 0.71 | 0.955434 |
Target: 5'- uCGACuuuUUCGuCGACAGCUUUAAUGUCGg -3' miRNA: 3'- -GUUGc--AAGU-GUUGUCGGAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 6118 | 0.71 | 0.95938 |
Target: 5'- cCGACGUUaCACuuCAG-UUCGACGUCGu -3' miRNA: 3'- -GUUGCAA-GUGuuGUCgGAGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 13802 | 0.71 | 0.966538 |
Target: 5'- gGACGUcgCACAACuuuGCCUgAuuuACGUCGu -3' miRNA: 3'- gUUGCAa-GUGUUGu--CGGAgU---UGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 54457 | 0.7 | 0.972755 |
Target: 5'- ----uUUCACAACGGCUUCGACGa-- -3' miRNA: 3'- guugcAAGUGUUGUCGGAGUUGCagc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 111836 | 0.7 | 0.975529 |
Target: 5'- -cGCGUUCACGGCcaucGCC--AGCGUCGa -3' miRNA: 3'- guUGCAAGUGUUGu---CGGagUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 40165 | 0.7 | 0.98045 |
Target: 5'- aCGACGUUCACGuacGCGGCggCGACGa-- -3' miRNA: 3'- -GUUGCAAGUGU---UGUCGgaGUUGCagc -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 68579 | 0.69 | 0.98803 |
Target: 5'- aAACGUUcCACuuuuuCAGCauugUCAACGUCGu -3' miRNA: 3'- gUUGCAA-GUGuu---GUCGg---AGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 80476 | 0.69 | 0.98803 |
Target: 5'- aCAACaUUagcaGCAGCAGCagcagCAGCGUCGa -3' miRNA: 3'- -GUUGcAAg---UGUUGUCGga---GUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 1823 | 0.68 | 0.989509 |
Target: 5'- cCGACGUcgUCGaAACAGUUUCAucuGCGUCGc -3' miRNA: 3'- -GUUGCA--AGUgUUGUCGGAGU---UGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 92610 | 0.68 | 0.989509 |
Target: 5'- aCAGCG-UCGCGuGCGGUCUCAagACGcUCGa -3' miRNA: 3'- -GUUGCaAGUGU-UGUCGGAGU--UGC-AGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 127948 | 0.68 | 0.989509 |
Target: 5'- gCGGCGgcgGCGGCGGCggCGGCGUCGu -3' miRNA: 3'- -GUUGCaagUGUUGUCGgaGUUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 38596 | 0.68 | 0.989509 |
Target: 5'- -cGCGUUCACGACcGUCUUuggcACGUUGu -3' miRNA: 3'- guUGCAAGUGUUGuCGGAGu---UGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 37430 | 0.68 | 0.992037 |
Target: 5'- --cCGUUC-CGACgaaGGCCUCAccauCGUCGg -3' miRNA: 3'- guuGCAAGuGUUG---UCGGAGUu---GCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 97558 | 0.68 | 0.992037 |
Target: 5'- aCAGCGUcCACAcgaaAGCgUCcACGUCGg -3' miRNA: 3'- -GUUGCAaGUGUug--UCGgAGuUGCAGC- -5' |
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8520 | 3' | -48.7 | NC_002169.1 | + | 57164 | 0.68 | 0.993105 |
Target: 5'- aAACGUUC-Cu-CAGCCggCGGCGUCc -3' miRNA: 3'- gUUGCAAGuGuuGUCGGa-GUUGCAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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