miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8520 3' -48.7 NC_002169.1 + 1823 0.68 0.989509
Target:  5'- cCGACGUcgUCGaAACAGUUUCAucuGCGUCGc -3'
miRNA:   3'- -GUUGCA--AGUgUUGUCGGAGU---UGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 6118 0.71 0.95938
Target:  5'- cCGACGUUaCACuuCAG-UUCGACGUCGu -3'
miRNA:   3'- -GUUGCAA-GUGuuGUCgGAGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 6380 0.67 0.996863
Target:  5'- gCGGCGgcgGCGGCGGCgaCUaCAGCGUCGa -3'
miRNA:   3'- -GUUGCaagUGUUGUCG--GA-GUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 6904 0.73 0.920552
Target:  5'- uCGACGUcgGCAGgGGCaUCGACGUCGg -3'
miRNA:   3'- -GUUGCAagUGUUgUCGgAGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 6940 0.67 0.996863
Target:  5'- uCGAUGUcgACAuCGGCaUCGACGUCGg -3'
miRNA:   3'- -GUUGCAagUGUuGUCGgAGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 12563 0.66 0.998155
Target:  5'- ---aGUUaCGCcGCuGCCuUCAACGUCGg -3'
miRNA:   3'- guugCAA-GUGuUGuCGG-AGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 13802 0.71 0.966538
Target:  5'- gGACGUcgCACAACuuuGCCUgAuuuACGUCGu -3'
miRNA:   3'- gUUGCAa-GUGUUGu--CGGAgU---UGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 15997 0.67 0.996863
Target:  5'- uGACGcaUUGCGGCAGCgUCGGCGgCGg -3'
miRNA:   3'- gUUGCa-AGUGUUGUCGgAGUUGCaGC- -5'
8520 3' -48.7 NC_002169.1 + 18932 0.66 0.998155
Target:  5'- aCAACGaUCACGGCAGUgU---CGUCGa -3'
miRNA:   3'- -GUUGCaAGUGUUGUCGgAguuGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 30806 0.66 0.998739
Target:  5'- gCAGCa---ACGGCAGCCUCAGCa--- -3'
miRNA:   3'- -GUUGcaagUGUUGUCGGAGUUGcagc -5'
8520 3' -48.7 NC_002169.1 + 34940 0.66 0.998471
Target:  5'- -uGCGUcucgaUUACAACAGCCUCGcuuUCGa -3'
miRNA:   3'- guUGCA-----AGUGUUGUCGGAGUugcAGC- -5'
8520 3' -48.7 NC_002169.1 + 37430 0.68 0.992037
Target:  5'- --cCGUUC-CGACgaaGGCCUCAccauCGUCGg -3'
miRNA:   3'- guuGCAAGuGUUG---UCGGAGUu---GCAGC- -5'
8520 3' -48.7 NC_002169.1 + 38596 0.68 0.989509
Target:  5'- -cGCGUUCACGACcGUCUUuggcACGUUGu -3'
miRNA:   3'- guUGCAAGUGUUGuCGGAGu---UGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 40165 0.7 0.98045
Target:  5'- aCGACGUUCACGuacGCGGCggCGACGa-- -3'
miRNA:   3'- -GUUGCAAGUGU---UGUCGgaGUUGCagc -5'
8520 3' -48.7 NC_002169.1 + 44120 0.66 0.998739
Target:  5'- aCGACGUUCGaAACGuGCCgUCucACGUCa -3'
miRNA:   3'- -GUUGCAAGUgUUGU-CGG-AGu-UGCAGc -5'
8520 3' -48.7 NC_002169.1 + 46049 0.68 0.994056
Target:  5'- gAACGagCgACGGCuGUCUCGGCGUCu -3'
miRNA:   3'- gUUGCaaG-UGUUGuCGGAGUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 54457 0.7 0.972755
Target:  5'- ----uUUCACAACGGCUUCGACGa-- -3'
miRNA:   3'- guugcAAGUGUUGUCGGAGUUGCagc -5'
8520 3' -48.7 NC_002169.1 + 57164 0.68 0.993105
Target:  5'- aAACGUUC-Cu-CAGCCggCGGCGUCc -3'
miRNA:   3'- gUUGCAAGuGuuGUCGGa-GUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 58980 0.67 0.99653
Target:  5'- uCAACuaucugCGCGACAGCCUgcgcgcgcucaccgaCGACGUUGa -3'
miRNA:   3'- -GUUGcaa---GUGUUGUCGGA---------------GUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 68579 0.69 0.98803
Target:  5'- aAACGUUcCACuuuuuCAGCauugUCAACGUCGu -3'
miRNA:   3'- gUUGCAA-GUGuu---GUCGg---AGUUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.