miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8520 3' -48.7 NC_002169.1 + 78493 0.66 0.998739
Target:  5'- --uCGUcgACAACAGCaauaaaaUCAACGUCa -3'
miRNA:   3'- guuGCAagUGUUGUCGg------AGUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 82709 0.67 0.994898
Target:  5'- gAACGccgcCGCAgccGCAGCUUgCGACGUCGu -3'
miRNA:   3'- gUUGCaa--GUGU---UGUCGGA-GUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 111650 0.67 0.995641
Target:  5'- aCGACGcgaUCGCAACGGCagaauCGUCGa -3'
miRNA:   3'- -GUUGCa--AGUGUUGUCGgaguuGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 95276 0.67 0.997358
Target:  5'- uCGGCGUUguCGACGGgCUgaaCGACGUCc -3'
miRNA:   3'- -GUUGCAAguGUUGUCgGA---GUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 129802 0.67 0.997358
Target:  5'- gCGACGcgacCACAAUGGCgaCAAUGUCGc -3'
miRNA:   3'- -GUUGCaa--GUGUUGUCGgaGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 107282 0.66 0.997786
Target:  5'- aGACGUgauggCcCAGCAGCUgcgCAACGUUc -3'
miRNA:   3'- gUUGCAa----GuGUUGUCGGa--GUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 18932 0.66 0.998155
Target:  5'- aCAACGaUCACGGCAGUgU---CGUCGa -3'
miRNA:   3'- -GUUGCaAGUGUUGUCGgAguuGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 12563 0.66 0.998155
Target:  5'- ---aGUUaCGCcGCuGCCuUCAACGUCGg -3'
miRNA:   3'- guugCAA-GUGuUGuCGG-AGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 30806 0.66 0.998739
Target:  5'- gCAGCa---ACGGCAGCCUCAGCa--- -3'
miRNA:   3'- -GUUGcaagUGUUGUCGGAGUUGcagc -5'
8520 3' -48.7 NC_002169.1 + 46049 0.68 0.994056
Target:  5'- gAACGagCgACGGCuGUCUCGGCGUCu -3'
miRNA:   3'- gUUGCaaG-UGUUGuCGGAGUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 71817 0.68 0.993105
Target:  5'- uGGCGUgaucggUCACGACGGCCUCGuagauUGUa- -3'
miRNA:   3'- gUUGCA------AGUGUUGUCGGAGUu----GCAgc -5'
8520 3' -48.7 NC_002169.1 + 92610 0.68 0.989509
Target:  5'- aCAGCG-UCGCGuGCGGUCUCAagACGcUCGa -3'
miRNA:   3'- -GUUGCaAGUGU-UGUCGGAGU--UGC-AGC- -5'
8520 3' -48.7 NC_002169.1 + 89236 0.72 0.93184
Target:  5'- -cAUGUUUACGACGGCguuUUCGACGUCc -3'
miRNA:   3'- guUGCAAGUGUUGUCG---GAGUUGCAGc -5'
8520 3' -48.7 NC_002169.1 + 79408 0.71 0.951235
Target:  5'- uCGACGagCACGGCGucGuCUUCGACGUCGg -3'
miRNA:   3'- -GUUGCaaGUGUUGU--C-GGAGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 6118 0.71 0.95938
Target:  5'- cCGACGUUaCACuuCAG-UUCGACGUCGu -3'
miRNA:   3'- -GUUGCAA-GUGuuGUCgGAGUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 54457 0.7 0.972755
Target:  5'- ----uUUCACAACGGCUUCGACGa-- -3'
miRNA:   3'- guugcAAGUGUUGUCGGAGUUGCagc -5'
8520 3' -48.7 NC_002169.1 + 40165 0.7 0.98045
Target:  5'- aCGACGUUCACGuacGCGGCggCGACGa-- -3'
miRNA:   3'- -GUUGCAAGUGU---UGUCGgaGUUGCagc -5'
8520 3' -48.7 NC_002169.1 + 80476 0.69 0.98803
Target:  5'- aCAACaUUagcaGCAGCAGCagcagCAGCGUCGa -3'
miRNA:   3'- -GUUGcAAg---UGUUGUCGga---GUUGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 38596 0.68 0.989509
Target:  5'- -cGCGUUCACGACcGUCUUuggcACGUUGu -3'
miRNA:   3'- guUGCAAGUGUUGuCGGAGu---UGCAGC- -5'
8520 3' -48.7 NC_002169.1 + 127948 0.68 0.989509
Target:  5'- gCGGCGgcgGCGGCGGCggCGGCGUCGu -3'
miRNA:   3'- -GUUGCaagUGUUGUCGgaGUUGCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.