miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8531 3' -48.5 NC_002169.1 + 55391 0.66 0.999228
Target:  5'- uGGCGucgaGAUAUAgugaaucguCGACGUCGCgGAa -3'
miRNA:   3'- -UCGCc---UUAUAUauu------GCUGCAGCGgCU- -5'
8531 3' -48.5 NC_002169.1 + 77736 0.66 0.999228
Target:  5'- cGGauGAAUGUucGACG-CGUCGUCGGc -3'
miRNA:   3'- -UCgcCUUAUAuaUUGCuGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 46242 0.66 0.999228
Target:  5'- uGCGGAAUGUuuuGUAGCGuuGaCGCgGGc -3'
miRNA:   3'- uCGCCUUAUA---UAUUGCugCaGCGgCU- -5'
8531 3' -48.5 NC_002169.1 + 64129 0.66 0.999228
Target:  5'- uGCGaGAAUGUGUcgacgcaggaaAACGucuCGUCGCUGc -3'
miRNA:   3'- uCGC-CUUAUAUA-----------UUGCu--GCAGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 104157 0.66 0.99905
Target:  5'- cGCGGAcgAUGgucu--CGUCGCCGu -3'
miRNA:   3'- uCGCCUuaUAUauugcuGCAGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 32870 0.66 0.998838
Target:  5'- gAGuCGuGAUAaguuUGUcGACGACGUCGUCGAc -3'
miRNA:   3'- -UC-GCcUUAU----AUA-UUGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 59923 0.66 0.998743
Target:  5'- cGGCGGAagcaugaaaAUAUcaucgucgacaccaAUuucgaccgacgugGACGGCGUCGCCGu -3'
miRNA:   3'- -UCGCCU---------UAUA--------------UA-------------UUGCUGCAGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 18155 0.66 0.998588
Target:  5'- -aCGGAAaccgAUAUAGCGGCGcUGcCCGAa -3'
miRNA:   3'- ucGCCUUa---UAUAUUGCUGCaGC-GGCU- -5'
8531 3' -48.5 NC_002169.1 + 34440 0.66 0.998588
Target:  5'- cGgGGAAcAUGacAAUGACGUCGuuGAa -3'
miRNA:   3'- uCgCCUUaUAUa-UUGCUGCAGCggCU- -5'
8531 3' -48.5 NC_002169.1 + 76453 0.66 0.998588
Target:  5'- aAGUGGAAUcaa-AACGuCGUCGUCGu -3'
miRNA:   3'- -UCGCCUUAuauaUUGCuGCAGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 86048 0.66 0.998588
Target:  5'- uGCaGGAAcaaGUGUGAucUGGuCGUCGCCGAc -3'
miRNA:   3'- uCG-CCUUa--UAUAUU--GCU-GCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 111750 0.67 0.997949
Target:  5'- uGGUGGAAguuuuUGUAUucguCGucGCGUCGUCGAu -3'
miRNA:   3'- -UCGCCUU-----AUAUAuu--GC--UGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 30308 0.67 0.997949
Target:  5'- uGGUGGuau-UGUcGACGACGcCGCCGc -3'
miRNA:   3'- -UCGCCuuauAUA-UUGCUGCaGCGGCu -5'
8531 3' -48.5 NC_002169.1 + 82675 0.67 0.997547
Target:  5'- aGGCGGAAacgaaaaAACG-CGcCGCCGAg -3'
miRNA:   3'- -UCGCCUUauaua--UUGCuGCaGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 27433 0.67 0.997547
Target:  5'- uGGCGGAAaacuuUGaAACGAUGggCGCCGu -3'
miRNA:   3'- -UCGCCUUau---AUaUUGCUGCa-GCGGCu -5'
8531 3' -48.5 NC_002169.1 + 48175 0.67 0.997547
Target:  5'- uGCGGAAaucgagAUAGCGGCaUCGCgGGc -3'
miRNA:   3'- uCGCCUUaua---UAUUGCUGcAGCGgCU- -5'
8531 3' -48.5 NC_002169.1 + 21983 0.67 0.996546
Target:  5'- cGUGGAAguucUAUGACGGCGUCcacaUCGAu -3'
miRNA:   3'- uCGCCUUau--AUAUUGCUGCAGc---GGCU- -5'
8531 3' -48.5 NC_002169.1 + 125260 0.68 0.994435
Target:  5'- -aCGuAAUGUAUAugG-UGUCGCCGAg -3'
miRNA:   3'- ucGCcUUAUAUAUugCuGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 39432 0.68 0.992521
Target:  5'- cGCGGA--------CGGCGUCGUCGAc -3'
miRNA:   3'- uCGCCUuauauauuGCUGCAGCGGCU- -5'
8531 3' -48.5 NC_002169.1 + 26197 0.69 0.990117
Target:  5'- cAGCGc-------AACGACGUCGCCGGc -3'
miRNA:   3'- -UCGCcuuauauaUUGCUGCAGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.