miRNA display CGI


Results 1 - 20 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8535 3' -44.8 NC_002169.1 + 105690 0.66 0.999996
Target:  5'- ----aUACaCGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 42192 0.91 0.327807
Target:  5'- -aUAGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119796 0.92 0.281698
Target:  5'- cUUUGGUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 42065 1.06 0.050302
Target:  5'- aUUUAGUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 104956 0.68 0.999818
Target:  5'- ----aUAgUCaAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUgAGcUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 52978 0.69 0.999511
Target:  5'- uUUUAGUACaCcAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGcUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11638 0.77 0.933219
Target:  5'- uUCUAGUACaUGAUgUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAgAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11366 0.77 0.915415
Target:  5'- uUUUAaUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11132 0.79 0.847071
Target:  5'- gUUUAaUACaUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105026 0.9 0.370324
Target:  5'- ----cUACUCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGAGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 11012 0.8 0.819821
Target:  5'- gUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 119518 0.79 0.880098
Target:  5'- uUUUAGUACaCGAUCUUUGCUUUUaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 108376 0.66 0.999994
Target:  5'- aCU-GUGC-CGAUU--UGUUUUCGUCg -3'
miRNA:   3'- aGAuCAUGaGCUAGaaACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 119616 0.8 0.819821
Target:  5'- uUUUAGUACaUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 53091 0.66 0.999988
Target:  5'- ----aUACUCaAUCUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGAGcUAGAAACGAAAGcAG- -5'
8535 3' -44.8 NC_002169.1 + 11761 0.78 0.908909
Target:  5'- ----aUACaCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 53315 0.85 0.561795
Target:  5'- --cAGUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGaGCUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 105289 0.92 0.296472
Target:  5'- cUCUAGUACaUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGaGCUAGAAACGAAAGCAg -5'
8535 3' -44.8 NC_002169.1 + 105600 0.66 0.999983
Target:  5'- ----aUACaCaAUCUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGaGcUAGAAACGAAAGCAG- -5'
8535 3' -44.8 NC_002169.1 + 53233 0.75 0.961187
Target:  5'- ----aUACaUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGaGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.