miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 3' -44.4 NC_002169.1 + 10815 1.13 0.020399
Target:  5'- cUCUAGUACACGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11638 0.97 0.179369
Target:  5'- uUCUAGUACAUGAUGUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11232 0.96 0.200189
Target:  5'- cUCUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 52662 0.95 0.223079
Target:  5'- uUUUAGUACACGAUGUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 52859 0.94 0.248158
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105400 0.94 0.248158
Target:  5'- cUUUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 71831 0.94 0.248158
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 119418 0.92 0.30525
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 120037 0.92 0.30525
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11477 0.92 0.313056
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10935 0.91 0.337376
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 119796 0.91 0.337376
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10904 0.9 0.38089
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11442 0.9 0.390032
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 42192 0.9 0.390032
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105289 0.89 0.427996
Target:  5'- cUCUAGUACAUGAUcUUUGCUUUCGUa -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAg -5'
8536 3' -44.4 NC_002169.1 + 119602 0.89 0.437824
Target:  5'- --cAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10707 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11034 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105322 0.87 0.52069
Target:  5'- --aAGUACACaAUGUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUGcUACAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.