miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 3' -44.4 NC_002169.1 + 10707 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10713 0.81 0.793719
Target:  5'- uUUUAGUACACaAUGUUUGCUUucaucuacgaUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGcUACAAACGAA----------AGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10815 1.13 0.020399
Target:  5'- cUCUAGUACACGAUGUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10904 0.9 0.38089
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10935 0.91 0.337376
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11012 0.77 0.93516
Target:  5'- gUUUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11034 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11132 0.77 0.950135
Target:  5'- gUUUAaUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUcAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11173 0.79 0.897469
Target:  5'- ----aUGCACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11232 0.96 0.200189
Target:  5'- cUCUAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11366 0.75 0.980696
Target:  5'- uUUUAaUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUcAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11442 0.9 0.390032
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11477 0.92 0.313056
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11568 0.76 0.954565
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11638 0.97 0.179369
Target:  5'- uUCUAGUACAUGAUGUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11761 0.77 0.950135
Target:  5'- ----aUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 32793 0.68 0.999948
Target:  5'- aCUAGUACGCuGAccgaUUUGCgucgUUUCGUCg -3'
miRNA:   3'- aGAUCAUGUG-CUac--AAACG----AAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 41772 0.66 0.999997
Target:  5'- ----aUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaucAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 41873 0.66 0.999998
Target:  5'- ----aUACACGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 41999 0.75 0.978261
Target:  5'- --cAGUACACGAUcUUUGCUUUCaUCu -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGcAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.