miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 3' -44.4 NC_002169.1 + 71637 0.76 0.962607
Target:  5'- --cAGUACACGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 53123 0.85 0.631457
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 53040 0.83 0.709522
Target:  5'- uUCUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 104956 0.83 0.731291
Target:  5'- --cAGUACAUGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105091 0.81 0.793719
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11173 0.79 0.897469
Target:  5'- ----aUGCACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaucAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 42255 0.77 0.93516
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 104833 0.77 0.93516
Target:  5'- uUUUAGUACAUGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 11568 0.76 0.954565
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 105501 0.87 0.531502
Target:  5'- --cAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 52784 0.87 0.531502
Target:  5'- --cGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 105322 0.87 0.52069
Target:  5'- --aAGUACACaAUGUUUGCUUUCGUCc -3'
miRNA:   3'- agaUCAUGUGcUACAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 52662 0.95 0.223079
Target:  5'- uUUUAGUACACGAUGUUUGCUUUCaUCg -3'
miRNA:   3'- -AGAUCAUGUGCUACAAACGAAAGcAG- -5'
8536 3' -44.4 NC_002169.1 + 119418 0.92 0.30525
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 120037 0.92 0.30525
Target:  5'- uUUUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10935 0.91 0.337376
Target:  5'- cUUUGGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11442 0.9 0.390032
Target:  5'- -aUAGUACACGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- agAUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 119602 0.89 0.437824
Target:  5'- --cAGUACACGAUcUUUGCUUUCGUCg -3'
miRNA:   3'- agaUCAUGUGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 10707 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5'
8536 3' -44.4 NC_002169.1 + 11034 0.87 0.509965
Target:  5'- cUCUAGUACuCGAUcUUUGCUUUCGUCc -3'
miRNA:   3'- -AGAUCAUGuGCUAcAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.