miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 5' -43 NC_002169.1 + 10849 1.1 0.041424
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 104997 1.1 0.041424
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42419 1.1 0.041424
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 53204 1.1 0.041424
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 119452 1.1 0.041424
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42350 1.09 0.046804
Target:  5'- cUCGAUGAAAGCAAAGAUCAUGUACUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105255 1.09 0.046804
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 71797 1.08 0.052864
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 104987 1.04 0.083106
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 105532 1.03 0.102339
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42158 1.01 0.129426
Target:  5'- -aGAUGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- agCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 52815 1.01 0.133245
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11068 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10741 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42031 0.99 0.158415
Target:  5'- cUCGAUGAAAGCAAAGAUCGUGUAUg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 53284 0.99 0.163006
Target:  5'- gUCGAcGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105236 0.99 0.167717
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11315 0.98 0.177507
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11732 0.98 0.182589
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 119762 0.98 0.182589
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUGa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.