miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 5' -43 NC_002169.1 + 10551 0.81 0.877233
Target:  5'- -aGAUGAAAGCAAAcAUUGUGUACUAa -3'
miRNA:   3'- agCUACUUUCGUUUcUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10679 0.87 0.605946
Target:  5'- gUCGAUGAAAGCAAAGAUCGuUGUGg-- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGU-ACAUgau -5'
8536 5' -43 NC_002169.1 + 10741 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10849 1.1 0.041424
Target:  5'- gUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10880 0.75 0.989733
Target:  5'- gUCGAaGAucuuggacgAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUaCU---------UUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 10969 0.78 0.952689
Target:  5'- uUCGAcGAAA-CAAAGAUCAUGUAUUAa -3'
miRNA:   3'- -AGCUaCUUUcGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10978 0.84 0.730984
Target:  5'- cUCGAcGAAAGCAAAcAUCGUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUcUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11068 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11096 0.84 0.752812
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 11196 0.8 0.885135
Target:  5'- -gGAcGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 11204 0.87 0.605946
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11315 0.98 0.177507
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11332 0.79 0.937847
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGcauuuCUGc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACau---GAU- -5'
8536 5' -43 NC_002169.1 + 11445 0.97 0.20997
Target:  5'- gUCGAUGAAAGCAAAGAUUGUGUAUUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11474 0.95 0.254179
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11602 0.91 0.421701
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11604 0.85 0.674755
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11732 0.98 0.182589
Target:  5'- gUCGAUGAAAGCAAAGAUCGaGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUaCAUGAU- -5'
8536 5' -43 NC_002169.1 + 14118 0.66 1
Target:  5'- uUCGAUGAcAGUguuGAGGUUAUuGUACa- -3'
miRNA:   3'- -AGCUACUuUCGu--UUCUAGUA-CAUGau -5'
8536 5' -43 NC_002169.1 + 16302 0.67 0.999999
Target:  5'- gUCGAUGAAAGgAguGAGA-CAUGUcACUu -3'
miRNA:   3'- -AGCUACUUUCgU--UUCUaGUACA-UGAu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.