miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8536 5' -43 NC_002169.1 + 119635 0.84 0.752812
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACc- -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 52698 0.92 0.364973
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 71670 0.92 0.364973
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 53156 0.91 0.392672
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUACUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 42032 0.91 0.421701
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105130 0.9 0.462341
Target:  5'- ----cGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- agcuaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11204 0.87 0.605946
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUAUUAa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 53076 0.86 0.640388
Target:  5'- -gGAcGAAAGCAAAGAUCAUGUAUUGa -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11604 0.85 0.674755
Target:  5'- -gGAcGAAAGCAAAGAUCGUGUAUUAu -3'
miRNA:   3'- agCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 120071 0.93 0.338654
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 119354 0.94 0.282721
Target:  5'- uUCGAUaAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUAcUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11474 0.95 0.254179
Target:  5'- gUCGAUGAAAGCAAAcAUCAUGUACUAg -3'
miRNA:   3'- -AGCUACUUUCGUUUcUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 119452 1.1 0.041424
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 104987 1.04 0.083106
Target:  5'- uUCGAUGAAAGCAAAGAUCAUGUGCg- -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGau -5'
8536 5' -43 NC_002169.1 + 105532 1.03 0.102339
Target:  5'- uUCGAUGAAAGCAAAGAUCGUGUAUUAc -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 52815 1.01 0.133245
Target:  5'- cUCGAUGAAAGCAAAGAUgGUGUACUAa -3'
miRNA:   3'- -AGCUACUUUCGUUUCUAgUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 10741 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11068 1 0.149581
Target:  5'- uUCGAcGAAAGCAAAGAUCAUGUACUAg -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 105236 0.99 0.167717
Target:  5'- gUCGAcGAAAGCAAAGAUCGUGUACUAa -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5'
8536 5' -43 NC_002169.1 + 11315 0.98 0.177507
Target:  5'- uUCGAcGAAAGCAAAGAUCGUGUACUAu -3'
miRNA:   3'- -AGCUaCUUUCGUUUCUAGUACAUGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.