miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 3' -44.3 NC_002169.1 + 11168 1.13 0.020673
Target:  5'- cAGAAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UCUUUACGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11438 0.88 0.460008
Target:  5'- uAGAAuaGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -UCUU--UAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119602 0.86 0.556381
Target:  5'- --cAGUaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 105397 0.86 0.567505
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 120232 0.86 0.567505
Target:  5'- --uAAUaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11490 0.86 0.567505
Target:  5'- uAGAAuUGacgcaauaguaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UCUUuAC-----------GUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 52779 0.85 0.623776
Target:  5'- uGAAucgGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uCUU---UAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 105501 0.84 0.65771
Target:  5'- --cAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 120040 0.84 0.668986
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11763 0.84 0.668986
Target:  5'- --uAAUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119421 0.84 0.668986
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 42191 0.84 0.668986
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119793 0.83 0.680225
Target:  5'- --uGGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10938 0.83 0.680225
Target:  5'- --uGGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 104767 0.82 0.756864
Target:  5'- --cAAUaCAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 53123 0.82 0.756864
Target:  5'- --cAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11138 0.82 0.766328
Target:  5'- uGAuGUGUuuaauacAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uCUuUACG-------UGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10901 0.82 0.767372
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11229 0.82 0.767372
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 104956 0.8 0.845149
Target:  5'- --cAGUaCAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.