miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 3' -44.3 NC_002169.1 + 2627 0.7 0.999417
Target:  5'- aGGGAAUGCACcAUCg--GCUcgauUUCGUUg -3'
miRNA:   3'- -UCUUUACGUGcUAGaaaCGA----AAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10513 0.69 0.999538
Target:  5'- uGAAAcccacaACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- uCUUUacg---UGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 10711 0.77 0.932679
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10818 0.76 0.948139
Target:  5'- --uAGUaCACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAgAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10901 0.82 0.767372
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10938 0.83 0.680225
Target:  5'- --uGGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11009 0.69 0.99978
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 11038 0.77 0.932679
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11138 0.82 0.766328
Target:  5'- uGAuGUGUuuaauacAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- uCUuUACG-------UGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11168 1.13 0.020673
Target:  5'- cAGAAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UCUUUACGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11229 0.82 0.767372
Target:  5'- --uAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11363 0.8 0.853915
Target:  5'- --uAAUaCAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11438 0.88 0.460008
Target:  5'- uAGAAuaGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -UCUU--UAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11490 0.86 0.567505
Target:  5'- uAGAAuUGacgcaauaguaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -UCUUuAC-----------GUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11569 0.67 0.999989
Target:  5'- cGGAAAcuUGaaCACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- -UCUUU--AC--GUGcUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11572 0.66 0.999993
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 11763 0.84 0.668986
Target:  5'- --uAAUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 27553 0.77 0.943275
Target:  5'- gAGAuuUGCACGAUUg--GCgcgUCGUCa -3'
miRNA:   3'- -UCUuuACGUGCUAGaaaCGaa-AGCAG- -5'
8538 3' -44.3 NC_002169.1 + 31414 0.71 0.997533
Target:  5'- cGgcGUGCACGAUCUcgucgaUGgUUUUGUCg -3'
miRNA:   3'- uCuuUACGUGCUAGAa-----ACgAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 38901 0.68 0.999871
Target:  5'- gAGGAuUGCACGAcgagUCguuaagUUGUUgUCGUCg -3'
miRNA:   3'- -UCUUuACGUGCU----AGa-----AACGAaAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.