miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8538 3' -44.3 NC_002169.1 + 41999 0.72 0.995811
Target:  5'- --cAGUaCACGAUCUUUGCUUUCaUCu -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 105205 0.79 0.878709
Target:  5'- --uAAUaCACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119328 0.79 0.886446
Target:  5'- -------gACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuacgUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10711 0.77 0.932679
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11038 0.77 0.932679
Target:  5'- -----aGUAcuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuuaCGU--GCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10818 0.76 0.948139
Target:  5'- --uAGUaCACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAgAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 71637 0.73 0.990856
Target:  5'- --cAGUaCACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 105094 0.73 0.992103
Target:  5'- --uAGUaCACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 41875 0.72 0.995055
Target:  5'- ------aCACGAUCUUUGCUUUCaUCg -3'
miRNA:   3'- ucuuuacGUGCUAGAAACGAAAGcAG- -5'
8538 3' -44.3 NC_002169.1 + 104956 0.8 0.845149
Target:  5'- --cAGUaCAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 41764 0.8 0.845149
Target:  5'- ---uAUGCuccauacuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuuUACGu-------GCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 104767 0.82 0.756864
Target:  5'- --cAAUaCAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 11438 0.88 0.460008
Target:  5'- uAGAAuaGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -UCUU--UAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119602 0.86 0.556381
Target:  5'- --cAGUaCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 52779 0.85 0.623776
Target:  5'- uGAAucgGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- uCUU---UAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 105501 0.84 0.65771
Target:  5'- --cAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 119421 0.84 0.668986
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 120040 0.84 0.668986
Target:  5'- --uAGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 10938 0.83 0.680225
Target:  5'- --uGGUaCACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5'
8538 3' -44.3 NC_002169.1 + 53123 0.82 0.756864
Target:  5'- --cAGUaCAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- ucuUUAcGUGCUAGAAACGAAAGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.