miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 53123 0.97 0.510634
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 41999 1.03 0.277137
Target:  5'- --cAGUACACGAUCUUUGCUUUCAUCu -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42188 1.02 0.335392
Target:  5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 53042 1.01 0.34441
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105501 1.01 0.34441
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 52784 1.01 0.353601
Target:  5'- --cGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 41872 1.01 0.362963
Target:  5'- ---cAUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 52662 1 0.392068
Target:  5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105202 1 0.392068
Target:  5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119602 1.04 0.269506
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11171 1.04 0.269506
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 104833 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105091 1.11 0.121211
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105407 1.08 0.164339
Target:  5'- cUUUAAUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119418 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 120037 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10935 1.06 0.208298
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11442 1.05 0.233877
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 71637 1.05 0.240672
Target:  5'- --cAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42255 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.