miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 11281 1.12 0.107101
Target:  5'- aUUUAAUACACAAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105091 1.11 0.121211
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105400 1.09 0.141275
Target:  5'- cUUUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105407 1.08 0.164339
Target:  5'- cUUUAAUACACGAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11477 1.07 0.179753
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 120037 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119418 1.07 0.179753
Target:  5'- uUUUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 120233 1.07 0.18517
Target:  5'- -gUAAUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119796 1.06 0.208298
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10935 1.06 0.208298
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42192 1.05 0.233877
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11764 1.05 0.233877
Target:  5'- -aUAAUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119518 1.05 0.233877
Target:  5'- uUUUAGUACACGAUCUUUGCUUUUAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11442 1.05 0.233877
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 71637 1.05 0.240672
Target:  5'- --cAGUACACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11012 1.04 0.254754
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119616 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 104833 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42255 1.04 0.254754
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 119602 1.04 0.269506
Target:  5'- --cAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.