Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8539 | 3' | -38 | NC_002169.1 | + | 11171 | 1.04 | 0.269506 |
Target: 5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41999 | 1.03 | 0.277137 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 11132 | 1.03 | 0.284939 |
Target: 5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 10904 | 1.03 | 0.284939 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42188 | 1.02 | 0.335392 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 53042 | 1.01 | 0.34441 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105501 | 1.01 | 0.34441 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52784 | 1.01 | 0.353601 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52978 | 1.01 | 0.362963 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGuUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 11366 | 1.01 | 0.362963 |
Target: 5'- uUUUAAUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41872 | 1.01 | 0.362963 |
Target: 5'- ---cAUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105601 | 1.01 | 0.372497 |
Target: 5'- ---cAUACACAAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 11230 | 1 | 0.382199 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 105202 | 1 | 0.392068 |
Target: 5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52662 | 1 | 0.392068 |
Target: 5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 10713 | 1 | 0.412296 |
Target: 5'- uUUUAGUACACAAUgUUUGCUUUCAUCu -3' miRNA: 3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 71829 | 0.98 | 0.476645 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52857 | 0.98 | 0.476645 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 104767 | 0.97 | 0.510634 |
Target: 5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 53123 | 0.97 | 0.510634 |
Target: 5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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