miRNA display CGI


Results 21 - 40 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 105322 0.91 0.770877
Target:  5'- --aAGUACACAAUgUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11036 0.92 0.736853
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10709 0.92 0.736853
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105287 0.92 0.725237
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUa -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAg -5'
8539 3' -38 NC_002169.1 + 42378 0.93 0.677802
Target:  5'- -----aACACAAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42447 0.93 0.677802
Target:  5'- -----aACACAAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 52898 0.95 0.617428
Target:  5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3'
miRNA:   3'- -AAAUUAUGUGuUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 53235 0.95 0.617428
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 53315 0.95 0.617428
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 104956 0.95 0.617428
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 42065 0.95 0.593295
Target:  5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105693 0.95 0.593295
Target:  5'- -gUAAUACACGAUCUUUGCUUUC-UCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGuAG- -5'
8539 3' -38 NC_002169.1 + 11570 0.96 0.581282
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10817 0.96 0.557419
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 104767 0.97 0.510634
Target:  5'- --cAAUACAUGAUCUUUGCUUUCGUCa -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 53123 0.97 0.510634
Target:  5'- --cAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 71829 0.98 0.476645
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 52857 0.98 0.476645
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10713 1 0.412296
Target:  5'- uUUUAGUACACAAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 105202 1 0.392068
Target:  5'- uUUUAAUACACGAUCUUUGCUUUUGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.