Results 21 - 40 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
8539 | 3' | -38 | NC_002169.1 | + | 11764 | 1.05 | 0.233877 |
Target: 5'- -aUAAUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 18625 | 0.68 | 1 |
Target: 5'- aUUGAUA-AC-AUCUUUGCcgUCAUCa -3' miRNA: 3'- aAAUUAUgUGuUAGAAACGaaAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41059 | 0.66 | 1 |
Target: 5'- ---cGUACACAcacAUUggUGCgUUCAUCa -3' miRNA: 3'- aaauUAUGUGU---UAGaaACGaAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41771 | 0.85 | 0.96102 |
Target: 5'- ---cAUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaauUAUGuGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41872 | 1.01 | 0.362963 |
Target: 5'- ---cAUACACGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaauUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41940 | 0.7 | 1 |
Target: 5'- --aGGUGUAUAAUUUUUGCUUUcCGUCa -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAA-GUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41961 | 0.68 | 1 |
Target: 5'- --cAAUAUuCAAUgUUUGCgUUCAUCg -3' miRNA: 3'- aaaUUAUGuGUUAgAAACGaAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 41999 | 1.03 | 0.277137 |
Target: 5'- --cAGUACACGAUCUUUGCUUUCAUCu -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42065 | 0.95 | 0.593295 |
Target: 5'- aUUUAGUACuCGAUCUUUGCUUUCGUCc -3' miRNA: 3'- -AAAUUAUGuGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42188 | 1.02 | 0.335392 |
Target: 5'- -gUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42192 | 1.05 | 0.233877 |
Target: 5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42255 | 1.04 | 0.254754 |
Target: 5'- uUUUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42378 | 0.93 | 0.677802 |
Target: 5'- -----aACACAAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 42447 | 0.93 | 0.677802 |
Target: 5'- -----aACACAAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaauuaUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52662 | 1 | 0.392068 |
Target: 5'- uUUUAGUACACGAUgUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52784 | 1.01 | 0.353601 |
Target: 5'- --cGGUACACGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52857 | 0.98 | 0.476645 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCGUCc -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52898 | 0.95 | 0.617428 |
Target: 5'- uUUUAGUACAUcAUCUUUGCUUUCAUCc -3' miRNA: 3'- -AAAUUAUGUGuUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 52978 | 1.01 | 0.362963 |
Target: 5'- uUUUAGUACACcAUCUUUGCUUUCAUCg -3' miRNA: 3'- -AAAUUAUGUGuUAGAAACGAAAGUAG- -5' |
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8539 | 3' | -38 | NC_002169.1 | + | 53042 | 1.01 | 0.34441 |
Target: 5'- -cUAGUACAUGAUCUUUGCUUUCAUCg -3' miRNA: 3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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