miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
8539 3' -38 NC_002169.1 + 5638 0.67 1
Target:  5'- ---uGUACGCGAUCgugauuguaugugGCUUUCAUg -3'
miRNA:   3'- aaauUAUGUGUUAGaaa----------CGAAAGUAg -5'
8539 3' -38 NC_002169.1 + 5798 0.67 1
Target:  5'- ---uGUAUACAuUUUUUGCUauaUCAUCa -3'
miRNA:   3'- aaauUAUGUGUuAGAAACGAa--AGUAG- -5'
8539 3' -38 NC_002169.1 + 10520 0.86 0.941849
Target:  5'- -----cACaACGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaauuaUG-UGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10709 0.92 0.736853
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10713 1 0.412296
Target:  5'- uUUUAGUACACAAUgUUUGCUUUCAUCu -3'
miRNA:   3'- -AAAUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10817 0.96 0.557419
Target:  5'- -cUAGUACACGAUgUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAgAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10904 1.03 0.284939
Target:  5'- uUUUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 10935 1.06 0.208298
Target:  5'- cUUUGGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11012 1.04 0.254754
Target:  5'- gUUUAGUACAUGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11036 0.92 0.736853
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11132 1.03 0.284939
Target:  5'- gUUUAAUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11171 1.04 0.269506
Target:  5'- --aAAUGCACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaaUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11230 1 0.382199
Target:  5'- -cUAGUACAUGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11281 1.12 0.107101
Target:  5'- aUUUAAUACACAAUCUUUGCUUUCAUCg -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11366 1.01 0.362963
Target:  5'- uUUUAAUACAUGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- -AAAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11442 1.05 0.233877
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCc -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11477 1.07 0.179753
Target:  5'- -aUAGUACACGAUCUUUGCUUUCGUCg -3'
miRNA:   3'- aaAUUAUGUGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11563 0.72 1
Target:  5'- cUUGA-ACACcAUCUUUGUUUUUGUCa -3'
miRNA:   3'- aAAUUaUGUGuUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11570 0.96 0.581282
Target:  5'- -cUAGUACuCGAUCUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGuGUUAGAAACGAAAGUAG- -5'
8539 3' -38 NC_002169.1 + 11636 0.91 0.803346
Target:  5'- -cUAGUACAUGAUgUUUGCUUUCAUCg -3'
miRNA:   3'- aaAUUAUGUGUUAgAAACGAAAGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.